9KMA image
Deposition Date 2024-11-15
Release Date 2025-06-18
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9KMA
Title:
Crystal structure of the CCA-adding enzyme from Arabidopsis thaliana
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.23 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Polynucleotide adenylyltransferase family protein
Gene (Uniprot):T22J18.17, T22J18_17
Chain IDs:A
Chain Length:580
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
Crystal structure of the CCA-adding enzyme from Arabidopsis thaliana .
J Struct Biol X 11 100127 100127 (2025)
PMID: 40519583 DOI: 10.1016/j.yjsbx.2025.100127

Abstact

The 3'-terminal CCA-end of tRNA is essential for the attachment of amino acids and correct positioning of the aminoacyl-tRNA in the ribosome. In higher plants, the CCA sequence is synthesized, maintained, and repaired by class-II CCA-adding enzymes encoded by a single nuclear gene but multi-targeted to the nucleus, cytoplasm, plastids, and mitochondria. The structure of plant class-II CCA-adding enzyme remains unsolved. Here we describe the crystal structure of CCA-adding enzyme from Arabidopsis thaliana (AtCCA). The overall structure of AtCCA is similar to other class-II CCA-adding enzymes, but significant differences occur in the body domain. Structural comparison of body and tail domains between AtCCA and other class-II CCA-adding enzymes unravels three specific regions of AtCCA. Based on the modeled AtCCA-tRNA complex, AtCCA may have a different tRNA binding pattern. The three specific regions located in the body domain of AtCCA also provide candidate regions for multi-targeted sorting.

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Primary Citation of related structures