ISDA: 9KFX

Deposition Date 2024-11-07

Release Date 2025-11-12

Last Version Date 2025-11-12

Entry Detail

PDB ID:

9KFX

Keywords:

HYDROLASE/RNA

Title:

Crystal structure of synthetic PPR-DYW in complex with target RNA

Biological Source:

Source Organism:

synthetic construct (Taxon ID: 32630)
Arabidopsis thaliana (Taxon ID: 3702)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.70 Å

R-Value Free:

0.24

R-Value Work:

0.19

R-Value Observed:

0.20

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:Synthetic PPR-DYW protein
Chain IDs:A, B
Chain Length:612
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polyribonucleotide
Molecule:rpoA RNA (5'-R(*UP*UP*AP*CP*AP*CP*GP*UP*GP*CP*AP*AP*AP*AP*UP*CP*UP*G)-3')
Chain IDs:C (auth: R), D (auth: r)
Chain Length:18
Number of Molecules:2
Biological Source:Arabidopsis thaliana

Ligand Molecules

GOL

Primary Citation

Structural basis of C-to-U RNA editing by PPR-DYW protein

Teramoto, T, Urushihara, R, Aoyama, R, Okada, A, Gutmann, B, Ichinose, M, Yagi, Y, Kakuta, Y, Nakamura, T.Show

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Primary Citation of related structures

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