9KDB image
Deposition Date 2024-11-03
Release Date 2025-10-08
Last Version Date 2025-11-12
Entry Detail
PDB ID:
9KDB
Keywords:
Title:
Structure of hTRPC3 in complex with Nb1-25 at 2.67 angstrom
Biological Source:
Source Organism:
Camelus (Taxon ID: 9836)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.67 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Short transient receptor potential channel 3
Gene (Uniprot):TRPC3
Chain IDs:B (auth: A), D (auth: B), F (auth: C), H (auth: D)
Chain Length:921
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nb1-25
Chain IDs:A (auth: E), C (auth: F), E (auth: G), G (auth: H)
Chain Length:184
Number of Molecules:4
Biological Source:Camelus
Primary Citation
Structural mechanism of the agonist binding on human TRPC3 channel.
Nat Commun 16 9343 9343 (2025)
PMID: 41125595 DOI: 10.1038/s41467-025-64435-6

Abstact

TRPC3/6/7 channels are cation channels that are directly activated by the second messenger diacylglycerol (DAG). These channels play crucial physiological roles and are implicated in various disease conditions; however, the binding mechanism of DAG to these channels remains incompletely understood. In this study, we present the structures of human TRPC3 in complex with DAG or synthetic activators, 4n and GSK1702934A. The structural analysis reveals that DAG binds at the L2 site, located near the pore on the extracellular side of TRPC3. Functional assays confirmed that the L2 site serves as the activating site for DAG. Notably, both 4n and GSK1702934A competitively bind to the same site, facilitating channel activation. Moreover, based on the pharmacophore identified from the DAG-bound structure, we found that monoacylglycerols (MAGs) are endogenous activators of TRPC3/6/7 channels, providing new insights into their regulatory mechanisms.

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Primary Citation of related structures
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