9KBA image
Deposition Date 2024-10-30
Release Date 2025-09-10
Last Version Date 2025-12-10
Entry Detail
PDB ID:
9KBA
Title:
The occluded structures of BjSemiSWEET in native cellular membranes determined by in situ solid-state NMR
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
1000
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sugar transporter SemiSWEET
Gene (Uniprot):bsr6460
Chain IDs:A, B
Chain Length:86
Number of Molecules:2
Biological Source:Bradyrhizobium diazoefficiens USDA 110
Ligand Molecules
Primary Citation
Dynamic structures of a membrane transporter in native cellular membranes.
Sci Adv 11 eadv4583 eadv4583 (2025)
PMID: 41223279 DOI: 10.1126/sciadv.adv4583

Abstact

Substrate transport through membrane transporters is a dynamic process that involves transitions between different functional conformations, which can be disrupted by non-native membrane mimetics. Capturing these conformations and their transitions within native cellular membranes presents a notable challenge. Herein, we used in situ solid-state nuclear magnetic resonance (NMR) to resolve the 1.5-Å outward-open and 2.5-Å occluded structures of BjSemiSWEET within its native cellular membranes. Our findings reveal that these two conformations exchange within transmembrane helix TM1 and Loop L2-3 on a millisecond to second timescale, with the exchange rate corresponding to the sucrose transport rate. Molecular dynamics simulations further confirmed that these conformations represent functional states during sucrose transport. In contrast, we observed different conformational dynamics of BjSemiSWEET in DMPC/DMPG synthetic bilayers compared to cellular membranes. This study highlights the potential of in situ solid-state NMR to provide previously unknown dynamic structural insights into cellular molecular processes, representing a substantial advancement in dynamic cellular structural biology.

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Primary Citation of related structures
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