9KAT image
Deposition Date 2024-10-29
Release Date 2025-04-16
Last Version Date 2025-04-30
Entry Detail
PDB ID:
9KAT
Keywords:
Title:
Crystal structure of anti-sulfonylurea antibody scFv apo form
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.51 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:anti-sulfonylurea antibody scFv
Chain IDs:A, B
Chain Length:260
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Structure Profiling of Broad-Specificity Immunoassays: Multitarget Recognition for Sulfonylurea Adulteration in Food.
J.Agric.Food Chem. 73 9348 9358 (2025)
PMID: 40173361 DOI: 10.1021/acs.jafc.5c00655

Abstact

The limited understanding of the broad-specific antibody recognition mechanism significantly hinders the development of immunoassays for simultaneously detecting illegal adulterants. Herein, a recombinant antisulfonylureas (SUs) single-chain variable fragment (scFv), which retained the properties of its parental monoclonal antibody, was successfully generated. X-ray crystallography, molecular docking, functional assays, and mutation validation were used to investigate the structure-function relationships underlying antibody-SUs binding. Our study revealed three key mechanisms for broad specificity: (1) the conformational adaptability of the scFv, which enabled various SUs to access the binding pocket; (2) the role of the Trp98 residue in CDR-L3 in modulating binding affinities among multiple SUs; and (3) the design of haptens with common structures and more rigid R substituents, which emerged as a promising strategy for generating broad-specific antibodies. This study provides a comprehensive analysis of the broad-specific recognition mechanism, offering valuable insights for rational hapten design and targeted antibody evolution to advance multitarget immunoassays.

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