9K9W image
Deposition Date 2024-10-28
Release Date 2025-12-03
Last Version Date 2025-12-03
Entry Detail
PDB ID:
9K9W
Keywords:
PHOTOSYNTHESIS
Title:
structure of bundle-shaped PBS with short rod
Biological Source:
Source Organism:
Gloeobacter violaceus PCC 7421 (Taxon ID: 251221)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9K9W validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Allophycocyanin beta subunit
Gene (Uniprot):apcB
Chain IDs:A, B (auth: Z), PC (auth: L5), RC (auth: N5), XC (auth: B5), ZC (auth: D5), BD (auth: F5), DD (auth: H5), FD (auth: J5), ID (auth: d5), KD (auth: f5), LD (auth: P5), ND (auth: R5), PD (auth: T5), RD (auth: V5), TD (auth: X5), VD (auth: Z5), XD (auth: b5), TE (auth: P7), VE (auth: R7), XE (auth: B7), ZE (auth: D7), BF (auth: F7), DF (auth: H7), FF (auth: J7), HF (auth: L7), JF (auth: N7), LF (auth: h7), NF (auth: j7), PF (auth: T7), RF (auth: V7), TF (auth: X7), VF (auth: Z7), XF (auth: b7), ZF (auth: d7), BG (auth: f7), IG (auth: l7), KG (auth: n7), MG (auth: p7), OG (auth: r7), QG (auth: t7), SG (auth: v7)
Chain Length:161
Number of Molecules:42
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7NL79 Pfam ID:PF00502
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phycocyanin alpha chain
Gene (Uniprot):cpcA
Chain IDs:C (auth: AA), E (auth: CA), G (auth: EA), I (auth: GA), K (auth: IA), M (auth: KA), Q (auth: OA), S (auth: QA), U (auth: SA), W (auth: UA), Y (auth: WA), AA (auth: YA), CA (auth: O1), EA (auth: Q1), GA (auth: S1), HA (auth: A1), IA (auth: G3), KA (auth: I3), MA (auth: K3), NA (auth: G2), PA (auth: I2), RA (auth: K2), VA (auth: A3), XA (auth: C3), ZA (auth: E3), CB (auth: A4), EB (auth: C4), JB (auth: O3), LB (auth: Q3), NB (auth: S3), PB (auth: U3), RB (auth: W3), TB (auth: Y3), WB (auth: T4), YB (auth: V4), AC (auth: E4), CC (auth: G4), EC (auth: I4), GC (auth: K4), JC (auth: N4), LC (auth: P4), NC (auth: R4), TC (auth: X4), GD (auth: C1), ZD (auth: K6), IE (auth: A6), KE (auth: C6), ME (auth: E6), OE (auth: G6), QE (auth: I6), CG (auth: E1), DG (auth: A8), FG (auth: C8), HG (auth: E8), XG (auth: T8), ZG (auth: V8), BH (auth: X8), DH (auth: G8), FH (auth: I8), HH (auth: K8), KH (auth: N8), MH (auth: P8), OH (auth: R8), UH (auth: O9), WH (auth: Q9), ZH (auth: A9), BI (auth: C9), DI (auth: E9), FI (auth: G9), HI (auth: I9), JI (auth: K9), LI (auth: S9), NI (auth: U9), PI (auth: W9), RI (auth: Y9), TI (auth: G1), XI (auth: I1), ZI (auth: K1), EJ (auth: U1), GJ (auth: W1), IJ (auth: Y1), KJ (auth: A2), MJ (auth: C2), OJ (auth: E2)
Chain Length:162
Number of Molecules:84
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7M7F7 Pfam ID:PF00502
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phycocyanin beta chain
Gene (Uniprot):cpcB
Chain IDs:D (auth: BA), F (auth: DA), H (auth: FA), J (auth: HA), L (auth: JA), N (auth: LA), R (auth: PA), T (auth: RA), V (auth: TA), X (auth: VA), Z (auth: XA), BA (auth: ZA), DA (auth: P1), FA (auth: R1), JA (auth: H3), LA (auth: J3), OA (auth: H2), QA (auth: J2), SA (auth: L2), WA (auth: B3), YA (auth: D3), AB (auth: F3), BB (auth: Z3), DB (auth: B4), FB (auth: D4), GB (auth: L3), KB (auth: P3), MB (auth: R3), OB (auth: T3), QB (auth: V3), SB (auth: X3), UB (auth: B1), VB (auth: S4), XB (auth: U4), ZB (auth: W4), BC (auth: F4), DC (auth: H4), FC (auth: J4), HC (auth: L4), KC (auth: O4), MC (auth: Q4), UC (auth: Y4), YD (auth: J6), AE (auth: L6), JE (auth: B6), LE (auth: D6), NE (auth: F6), PE (auth: H6), RE (auth: D1), EG (auth: B8), GG (auth: D8), YG (auth: U8), AH (auth: W8), CH (auth: F8), EH (auth: H8), GH (auth: J8), IH (auth: L8), LH (auth: O8), NH (auth: Q8), PH (auth: S8), QH (auth: F1), RH (auth: L9), VH (auth: P9), XH (auth: Y8), AI (auth: B9), CI (auth: D9), EI (auth: F9), GI (auth: H9), II (auth: J9), KI (auth: R9), MI (auth: T9), OI (auth: V9), QI (auth: X9), SI (auth: Z9), WI (auth: H1), YI (auth: J1), AJ (auth: L1), DJ (auth: T1), FJ (auth: V1), HJ (auth: X1), JJ (auth: Z1), LJ (auth: B2), NJ (auth: D2), PJ (auth: F2)
Chain Length:172
Number of Molecules:84
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7M7C7 Pfam ID:PF00502
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Allophycocyanin alpha subunit
Gene (Uniprot):apcA
Chain IDs:OC (auth: K5), QC (auth: M5), SC (auth: O5), WC (auth: A5), YC (auth: C5), AD (auth: E5), CD (auth: G5), ED (auth: I5), HD (auth: c5), JD (auth: e5), MD (auth: Q5), OD (auth: S5), QD (auth: U5), SD (auth: W5), UD (auth: Y5), WD (auth: a5), DE (auth: A7), SE (auth: O7), UE (auth: Q7), WE (auth: S7), YE (auth: C7), AF (auth: E7), CF (auth: G7), EF (auth: I7), GF (auth: K7), IF (auth: M7), KF (auth: g7), MF (auth: i7), OF (auth: k7), QF (auth: U7), SF (auth: W7), UF (auth: Y7), WF (auth: a7), YF (auth: c7), AG (auth: e7), JG (auth: m7), LG (auth: o7), NG (auth: q7), PG (auth: s7), RG (auth: u7)
Chain Length:161
Number of Molecules:40
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7NL80 Pfam ID:PF00502
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glr2806 protein
Gene (Uniprot):glr2806
Chain IDs:TA (auth: M2), BE (auth: M6)
Chain Length:729
Number of Molecules:2
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7NGT2 Pfam ID:PF00427
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phycocyanin-associated rod linker protein
Gene (Uniprot):cpcC
Chain IDs:O (auth: MA), HB (auth: M3), IC (auth: M4), JH (auth: M8), SH (auth: M9), BJ (auth: M1)
Chain Length:274
Number of Molecules:6
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7NGF2 Pfam ID:PF00427
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CpcD protein
Gene (Uniprot):cpcD
Chain IDs:UA (auth: N2), CE (auth: N6)
Chain Length:70
Number of Molecules:2
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7NL59 Pfam ID:PF01383
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phycocyanin-associated rod linker protein
Gene (Uniprot):cpcC
Chain IDs:P (auth: NA), IB (auth: N3), VC (auth: Z4), TH (auth: N9), YH (auth: Z8), CJ (auth: N1)
Chain Length:275
Number of Molecules:6
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7NM19 Pfam ID:PF00427
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glr1262 protein
Gene (Uniprot):glr1262
Chain IDs:UI (auth: a9), VI (auth: aA)
Chain Length:824
Number of Molecules:2
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7NL64 Pfam ID:PF00427
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phycobiliprotein ApcE
Gene (Uniprot):apcE
Chain IDs:GE (auth: j5), HE (auth: k5)
Chain Length:161
Number of Molecules:2
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7NL81 Pfam ID:PF00502, PF00427
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core
Gene (Uniprot):apcC
Chain IDs:EE (auth: z5), FE (auth: i5), TG (auth: z7), UG (auth: w7), VG (auth: x7), WG (auth: y7)
Chain Length:161
Number of Molecules:6
Biological Source:Gloeobacter violaceus PCC 7421
UniProt ID:Q7NL78 Pfam ID:PF01383
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MEN A ASN modified residue
Ligand Molecules
CYC
Primary Citation
Light-induced structural adaptation of the bundle-shaped phycobilisome from thylakoid-lacking cyanobacterium Gloeobacter violaceus
Nat Commun 16 5956 ? (2025)
DOI: 10.1038/s41467-025-60673-w
Primary Citation of related structures
8JKX
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