9K9R image
Deposition Date 2024-10-27
Release Date 2025-03-05
Last Version Date 2025-09-10
Entry Detail
PDB ID:
9K9R
Keywords:
Title:
MPXV DNA polymerase in complex with primer/5U template DNA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.61 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA polymerase
Gene (Uniprot):OPG071
Mutagens:D166A and E168A
Chain IDs:A
Chain Length:1031
Number of Molecules:1
Biological Source:Monkeypox virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E4R
Chain IDs:B
Chain Length:218
Number of Molecules:1
Biological Source:Monkeypox virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA polymerase processivity factor component A20
Chain IDs:C
Chain Length:426
Number of Molecules:1
Biological Source:Monkeypox virus
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (25-MER)
Chain IDs:D (auth: P)
Chain Length:25
Number of Molecules:1
Biological Source:Monkeypox virus
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5U 38-MER)
Chain IDs:E (auth: T)
Chain Length:38
Number of Molecules:1
Biological Source:Monkeypox virus
Primary Citation
Structural basis of DNA replication fidelity of the Mpox virus.
Proc.Natl.Acad.Sci.USA 122 e2411686122 e2411686122 (2025)
PMID: 40035768 DOI: 10.1073/pnas.2411686122

Abstact

The Mpox virus (MPXV) is an orthopoxvirus that caused a global outbreak in 2022. The poxvirus DNA polymerase complex is responsible for the replication and integrity of the viral genome; however, the molecular mechanisms underlying DNA replication fidelity are still unclear. In this study, we determined the cryoelectron microscopy (cryo-EM) structures of the MPXV F8-A22-E4 polymerase holoenzyme in its editing state, in complex with mismatched primer-template DNA and DNA containing uracil deoxynucleotide. We showed that the MPXV polymerase has a similar replication-to-edit transition mechanism to proofread the mismatched nucleotides like the B-family DNA polymerases of other species. The unique processivity cofactor A22-E4 undergoes conformational changes in different working states and might affect the proofreading process. Moreover, we elucidated the base excision repair (BER) function of E4 as a uracil-DNA glycosylase and the coupling mechanism of genome replication and BER, characteristic of poxviruses. Our findings greatly enhance our molecular understanding of DNA replication fidelity of orthopoxviruses and will stimulate the development of broad-spectrum antiviral drugs.

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