9K7M image
Deposition Date 2024-10-24
Release Date 2024-11-06
Last Version Date 2025-06-25
Entry Detail
PDB ID:
9K7M
Keywords:
Title:
Coprinopsis cinerea GH131 protein CcGH131B E161A in complex with cellobiose
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycoside hydrolase 131 catalytic N-terminal domain-containing protein
Gene (Uniprot):CC1G_15039
Mutations:T87A/E161A/K247E
Chain IDs:A, B
Chain Length:313
Number of Molecules:2
Biological Source:Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
Peptide-like Molecules
PRD_900023
Primary Citation
Crystal Structure of CcGH131B, a Protein Belonging to Glycoside Hydrolase Family 131 from the Basidiomycete Coprinopsis cinerea .
J Appl Glycosci (1999) 72 7202104 7202104 (2025)
PMID: 40502376 DOI: 10.5458/jag.7202104

Abstact

Glycoside hydrolase family 131 (GH131) proteins are found in oomycetes, ascomycetes, and basidiomycetes, and have been reported to hydrolyze various β-glucan polysaccharides. Coprinopsis cinerea, a model basidiomycete, contains two GH131 proteins, CcGH131A and CcGH131B. This study focuses on the structural and functional properties of CcGH131B, a protein that lacks the carbohydrate bonding module 1 (CBM1) domain present in CcGH131A. The crystal structure of CcGH131B was determined. The structure displayed a β-jelly roll fold with extra loops and α-helices, resulting in a deeper substrate-binding groove compared to CcGH131A and also PaGluc131A, a GH131 protein from Podospora anserina. A cellobiose-bound structure of the E161A mutant, in which the potential catalytic residue Glu161 was substituted with Ala, showed that the region of the minus subsites bind cellulose. In contrast, the region of the plus subsites mainly consists of hydrophobic amino acid residues and appeared to interact with hydrophobic molecules rather than with carbohydrates. Analysis using native affinity polyacrylamide gel electrophoresis showed that CcGH131B interacted with cellulosic polysaccharides such as methylcellulose and carboxymethylcellulose, while the protein exhibited no detectable enzymatic activity under the tested conditions. These results suggest that the substrate specificity of CcGH131B is likely to be different from those of CcGH131A and PaGluc131A.

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Primary Citation of related structures