ISDA

Entry Detail

PDB ID:

9K39

EMDB ID:

EMD-62010

Keywords:

TRANSCRIPTION/DNA/RNA

Title:

Human RNA Polymerase III de novo transcribing complex 8 (TC8)

Biological Source:

Source Organism:

Homo sapiens

Host Organism:

Homo sapiens

PDB Version:

Deposition Date:

2024-10-18

Release Date:

2025-04-16

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.80 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC1
Chain IDs:A
Chain Length:1390
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O14802 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC2
Chain IDs:B
Chain Length:1133
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NW08 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I and III subunit RPAC1
Chain IDs:C
Chain Length:346
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O15160 Pfam ID:PF01193, PF01000

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC9
Chain IDs:D
Chain Length:148
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O75575 Pfam ID:PF03874

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC1
Chain IDs:E
Chain Length:210
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P19388 Pfam ID:PF03871, PF01191

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Chain IDs:F
Chain Length:127
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P61218 Pfam ID:PF01192

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC8
Chain IDs:G
Chain Length:204
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y535 Pfam ID:PF03876, PF08292

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Chain IDs:H
Chain Length:150
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P52434 Pfam ID:PF03870

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC10
Chain IDs:I
Chain Length:108
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y2Y1 Pfam ID:PF02150, PF01096

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Chain IDs:J
Chain Length:67
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P62875 Pfam ID:PF01194

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I and III subunit RPAC2
Chain IDs:K
Chain Length:133
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P0DPB6 Pfam ID:PF13656

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC4
Chain IDs:L
Chain Length:58
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P53803 Pfam ID:PF03604

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC5
Chain IDs:M
Chain Length:708
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NVU0 Pfam ID:PF04801, PF19725

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC4
Chain IDs:N
Chain Length:398
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P05423 Pfam ID:PF05132

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC3
Chain IDs:O
Chain Length:534
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BUI4 Pfam ID:PF08221, PF05645, PF22536, PF20912

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC6
Chain IDs:P
Chain Length:316
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H1D9 Pfam ID:PF05158

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase III subunit RPC7
Chain IDs:Q
Chain Length:223
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O15318 Pfam ID:PF11705

Protein Blast

Polymer Type:polypeptide(L)
Description:Transcription factor IIIB 50 kDa subunit
Chain IDs:R (auth: V)
Chain Length:419
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9HAW0 Pfam ID:PF08271, PF21886

Polymer Type:polydeoxyribonucleotide
Description:DNA (50-MER)
Chain IDs:S (auth: X)
Chain Length:50
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polydeoxyribonucleotide
Description:DNA (50-MER)
Chain IDs:T (auth: Y)
Chain Length:50
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Description:RNA (5'-R(P*UP*GP*CP*UP*CP*GP*C)-3')
Chain IDs:U (auth: Z)
Chain Length:7
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules