9K2V image
Deposition Date 2024-10-18
Release Date 2025-04-09
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9K2V
Keywords:
Title:
Cyanophage A4 pre-ejectosome
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Internal protein
Gene (Uniprot):A4L_28
Chain IDs:U (auth: E), V (auth: d), W (auth: A), X (auth: e), Y (auth: B), Z (auth: a), AA (auth: C), BA (auth: b), CA (auth: D), DA (auth: c)
Chain Length:1058
Number of Molecules:10
Biological Source:Anabaena phage A-4L
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Portal protein
Gene (Uniprot):A4L_35
Chain IDs:A (auth: K), B (auth: M), C (auth: O), D (auth: G), E (auth: I), F, G (auth: H), H (auth: J), I (auth: L), J (auth: N)
Chain Length:653
Number of Molecules:10
Biological Source:Anabaena phage A-4L
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Internal virion protein
Gene (Uniprot):A4L_29
Chain IDs:K (auth: V), L (auth: W), M (auth: X), N (auth: Y), O (auth: Z), P (auth: v), Q (auth: w), R (auth: x), S (auth: y), T (auth: z)
Chain Length:380
Number of Molecules:10
Biological Source:Anabaena phage A-4L
Ligand Molecules
Primary Citation
Cryo-EM structure of cyanopodophage A4 reveals a pentameric pre-ejectosome in the double-stabilized capsid.
Proc.Natl.Acad.Sci.USA 122 e2423403122 e2423403122 (2025)
PMID: 40163721 DOI: 10.1073/pnas.2423403122

Abstact

Upon infection, the podophages usually eject a couple of proteins from the capsid to form a transmembrane ejectosome on the host cell membrane that facilitates the ejection of viral genome. However, it remains unclear how these proteins of pre-ejectosome are finely assembled at the center of highly packaged genome. Here, we report the intact structure of Anabaena cyanopodophage A4, which consists of a capsid stabilized by two types of cement proteins and a short tail attached with six tail fibers. Notably, we find a pentameric pre-ejectosome at the core of capsid, which is composed of four ejection proteins wrapped into a coaxial cylinder of triple layers. Moreover, a segment of genomic DNA runs along the positively charged circular cleft formed by two ejection proteins. Based on the mortise-and-tenon architecture of pre-ejectosome in combination with previous studies, we propose a putative DNA packaging process and ejection mechanism for podophages. These findings largely enrich our knowledge on the assembly mechanism of podophages, which might facilitate the application of A4 as a chassis cyanophage in synthetic biology.

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