9K2J image
Deposition Date 2024-10-17
Release Date 2025-03-19
Last Version Date 2025-03-19
Entry Detail
PDB ID:
9K2J
Keywords:
Title:
X-ray crystal structure of 3-hydroxyisobutyrate dehydrogenase
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.88 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
I 41 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:3-hydroxyisobutyrate dehydrogenase
Chain IDs:A, B, C
Chain Length:286
Number of Molecules:3
Biological Source:Desulfovibrio sp.
Ligand Molecules
Primary Citation
Mirror substrates specificity of a 2, 3-dihydroxypropanesulfonate degrading enzyme in sulfate-reducing bacteria.
Int.J.Biol.Macromol. 306 141806 141806 (2025)
PMID: 40054810 DOI: 10.1016/j.ijbiomac.2025.141806

Abstact

Ubiquitous R- and S-enantiomers of 2,3-dihydroxypropanesulfonate (DHPS), organic sulfur compounds produced by photosynthetic organisms, serve as common nutrient and energy sources for specific bacteria. While most known DHPS-degrading enzymes exhibit enantioselectivity, this study introduces a unique dehydrogenase, DhpA from the sulfate-reducing bacterium Desulfovibrio sp. DF1, capable of efficiently metabolizing both R- and S-DHPS to 3-sulfolactaldehyde (SLA). The crystal structure of DhpA reveals a conserved binding pocket that recognizes the sulfonate group of DHPS through interactions with Lys123, Ser174, and Asn175. The catalytic mechanism of the enzyme involves the oxidation of the C3-OH group of both enantiomers, facilitated by the Lys171. The mutation of Lys171 significantly diminishes activity, confirming its critical role in catalysis. Based on biochemical and genetic analyses, this study proposes a chiral DHPS degradation pathway in bacteria. This study reveals the unique enantiomeric selectivity of DhpA, expanding our understanding of the bacterial metabolism of chiral molecules.

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Primary Citation of related structures