9K1L image
Deposition Date 2024-10-16
Release Date 2025-03-12
Last Version Date 2025-03-19
Entry Detail
PDB ID:
9K1L
Title:
Complex structure of CNK2 and SAMD12
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Connector enhancer of kinase suppressor of ras 2
Gene (Uniprot):Cnksr2
Chain IDs:A
Chain Length:319
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sterile alpha motif domain-containing protein 12
Gene (Uniprot):Samd12
Chain IDs:B
Chain Length:98
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
SAMD12 as a Master Regulator of MAP4Ks by Decoupling Kinases From the CNKSR2 Scaffold.
J.Mol.Biol. 437 169034 169034 (2025)
PMID: 40010432 DOI: 10.1016/j.jmb.2025.169034

Abstact

The MAP4K member TNIK and the multi-domain scaffold protein CNKSR2, both of which are clustered at neuronal synapses, interact with each other and are closely associated with neurodevelopmental disorders, although the mechanism underlying their interaction is unclear. In this study, we characterized the interaction mechanisms between MAP4K kinases (MAP4K4, MINK1 and TNIK) and the CNKSR1/2/3 scaffold proteins, and discovered that SAMD12, a familial adult myoclonic epilepsy disease gene product, or its close homolog SAMD10, binds to CNKSR1/2/3 with exceptionally strong affinities and can quantitatively displace MAP4K from CNKSR1/2/3 scaffolds. Additionally, we demonstrated that CNKSR2 acts as both a scaffold and an activator of TNIK during neuronal synapse development. Ectopic expression of SAMD12 can effectively alter synapse development, likely by inhibiting TNIK activity through the dissociation of the kinase from CNKSR2. Our findings may have broad implications on the roles of MAP4Ks and CNKSR1/2/3 in the nervous system and in other tissues under physiological and pathophysiological processes.

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Primary Citation of related structures
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