9K1K image
Deposition Date 2024-10-16
Release Date 2025-10-22
Last Version Date 2025-12-10
Entry Detail
PDB ID:
9K1K
Title:
Yeast Cytosine Deaminase mutant-M100H
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.44 Å
R-Value Free:
0.14
R-Value Work:
0.12
Space Group:
P 43
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytosine deaminase
Gene (Uniprot):FCY1
Mutagens:M100H
Chain IDs:A, B
Chain Length:158
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Ligand Molecules
Primary Citation
An engineered yeast cytosine deaminase with improved catalytic activity and stability for macrophage-mediated enzyme/prodrug therapy.
Commun Biol 8 1562 1562 (2025)
PMID: 41233498 DOI: 10.1038/s42003-025-08931-x

Abstact

Utilization of yeast cytosine deaminase (yCD) to activate the prodrug 5-fluorocytosine (5-FC) to 5-fluorouracil (5-FU) at the target site is an attractive strategy for overcoming the narrow therapeutic index of 5-FU. Nevertheless, protein delivery of yCD is challenging in part due to its thermal instability. Herein, we have rationally engineered a mutant yCD by replacing Met100 situated at the active site entry with the bulkier histidine to hinder potential oxidation of the active site Cys91. The engineered yCD-Met100His exhibits significantly enhanced activity and thermal stability. yCD-M100H is then genetically fused to the crystal-forming protein Cry3Aa to generate Cry3Aa-yCD-M100H fusion crystals to facilitate the enzyme's uptake into macrophages. The resulting Cry3Aa-yCD-M100H-loaded macrophages exhibit excellent penetration into tumor spheroids and readily convert 5-FC to 5-FU leading to efficacious cancer cell killing. This study showcases a promising route for stabilizing yCD and the feasibility of enzyme-internalized macrophages to serve as tumor-specific enzyme/prodrug activators.

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Primary Citation of related structures
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