9K0E image
Deposition Date 2024-10-15
Release Date 2025-08-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9K0E
Title:
Cryo-EM structure of Amyloid-beta42-4b polymorph 2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Amyloid-beta protein 40
Gene (Uniprot):APP
Chain IDs:B (auth: F), D (auth: A), F (auth: L), H (auth: D), J (auth: M), L (auth: E)
Chain Length:13
Number of Molecules:6
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Amyloid-beta A4 protein
Chain IDs:A (auth: G), C (auth: B), E (auth: N), G (auth: H), I (auth: O), K (auth: I)
Chain Length:42
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
An O-glycopeptide participates in the formation of distinct A beta 42 fibril structures and attenuates A beta 42 neurotoxicity.
Nat Commun 16 5815 5815 (2025)
PMID: 40593714 DOI: 10.1038/s41467-025-60978-w

Abstact

The self-assembly of biomolecules through noncovalent interactions is critical in both physiological and pathological processes, as exemplified by the assembly of amyloid β peptide (Aβ) into oligomers or fibrils in Alzheimer's disease (AD). Developing molecules that can modulate this assembly process holds significant mechanistic and therapeutic potential. In this study, we identified glycopeptides as a class of protein aggregation modulators, showing that β-N-acetylgalactosamine (β-GalNAc)-modified Aβ9-21 promotes Aβ42 fibrillation while reducing its toxic oligomers. Using biochemical assays, cryo-EM, and molecular dynamics simulations, we demonstrated that β-GalNAc-modified Aβ9-21 coassembles with Aβ42, forming unique fibril structures stabilized by both hydrophobic interactions and an organized hydrogen bond network facilitated by the glycopeptide. Importantly, β-GalNAc-modified Aβ9-21 can alleviate the neurotoxicity of Aβ42 in neuronal cells and an AD male mouse model. These findings underscore the potential of glycopeptides in regulating amyloid aggregation and provide structural insights for designing molecules targeting amyloid-related pathologies.

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Primary Citation of related structures
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