9K09 image
Entry Detail
PDB ID:
9K09
EMDB ID:
Keywords:
Title:
Cyanophage A4 portal-tail complex
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-10-15
Release Date:
2025-04-09
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tail fiber protein
Chain IDs:A, B, C, P, Q, R, V (auth: X), W (auth: Y), X (auth: Z), Y (auth: a), Z (auth: b), AA (auth: c), NA (auth: p), OA (auth: q), PA (auth: r), TA (auth: x), UA (auth: y), VA (auth: z)
Chain Length:372
Number of Molecules:18
Biological Source:Anabaena phage A-4L
Polymer Type:polypeptide(L)
Description:Portal protein
Chain IDs:D, E, F, G, H, I, J, K, L, M, N, O
Chain Length:217
Number of Molecules:12
Biological Source:Anabaena phage A-4L
Polymer Type:polypeptide(L)
Description:Tail tubular protein B
Chain IDs:S (auth: U), T (auth: V), U (auth: W), QA (auth: u), RA (auth: v), SA (auth: w)
Chain Length:1015
Number of Molecules:6
Biological Source:Anabaena phage A-4L
Polymer Type:polypeptide(L)
Description:Tail tubular protein A
Chain IDs:BA (auth: d), CA (auth: e), DA (auth: f), EA (auth: g), FA (auth: h), GA (auth: i), HA (auth: j), IA (auth: k), JA (auth: l), KA (auth: m), LA (auth: n), MA (auth: o)
Chain Length:217
Number of Molecules:12
Biological Source:Anabaena phage A-4L
Ligand Molecules
Primary Citation
Cryo-EM structure of cyanopodophage A4 reveals a pentameric pre-ejectosome in the double-stabilized capsid.
Proc.Natl.Acad.Sci.USA 122 e2423403122 e2423403122 (2025)
PMID: 40163721 DOI: 10.1073/pnas.2423403122

Abstact

Upon infection, the podophages usually eject a couple of proteins from the capsid to form a transmembrane ejectosome on the host cell membrane that facilitates the ejection of viral genome. However, it remains unclear how these proteins of pre-ejectosome are finely assembled at the center of highly packaged genome. Here, we report the intact structure of Anabaena cyanopodophage A4, which consists of a capsid stabilized by two types of cement proteins and a short tail attached with six tail fibers. Notably, we find a pentameric pre-ejectosome at the core of capsid, which is composed of four ejection proteins wrapped into a coaxial cylinder of triple layers. Moreover, a segment of genomic DNA runs along the positively charged circular cleft formed by two ejection proteins. Based on the mortise-and-tenon architecture of pre-ejectosome in combination with previous studies, we propose a putative DNA packaging process and ejection mechanism for podophages. These findings largely enrich our knowledge on the assembly mechanism of podophages, which might facilitate the application of A4 as a chassis cyanophage in synthetic biology.

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Primary Citation of related structures