ISDA

Deposition Date 2024-10-13

Release Date 2025-10-15

Last Version Date 2025-11-05

Entry Detail

PDB ID:

9JYX

Keywords:

LIPID BINDING PROTEIN

Title:

Crystal structure of Nir2 DDHD domain

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.80 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 31 2 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Membrane-associated phosphatidylinositol transfer protein 1
Gene (Uniprot):PITPNM1
Chain IDs:A, B, C
Chain Length:360
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:O00562 Pfam ID:PF02862

Ligand Molecules

PO4

Primary Citation

Nir2 crystal structures reveal a phosphatidic acid-sensing mechanism at ER-PM contact sites.

Kim, D, Lee, S, Jun, Y, Lee, C.Show

Proc.Natl.Acad.Sci.USA 122 e2516849122 e2516849122 (2025)

PMID: 41129229 DOI: 10.1073/pnas.2516849122

Primary Citation of related structures