9JXJ image
Deposition Date 2024-10-11
Release Date 2025-08-27
Last Version Date 2025-09-17
Entry Detail
PDB ID:
9JXJ
Title:
Cryo-EM structure of human XPR1 in a closed state at both the extracellular and intracellular gates, obtained through local refinement
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.22 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Solute carrier family 53 member 1
Gene (Uniprot):XPR1
Chain IDs:A (auth: B)
Chain Length:624
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
KIDINS220 and InsP8 safeguard the stepwise regulation of phosphate exporter XPR1.
Mol.Cell 85 3209 3224.e8 (2025)
PMID: 40858110 DOI: 10.1016/j.molcel.2025.08.003

Abstact

XPR1 is emerging as the only known inorganic phosphate (Pi) exporter in humans, critical for Pi homeostasis, with its activity stimulated by inositol pyrophosphate InsP8 and regulated by neuronal scaffold protein KIDINS220. Our structural studies reveal that InsP8 specifically activates XPR1 in a stepwise manner, involving profound SYG1/PHO/XPR1 (SPX) domain movements. Each XPR1 subunit functions with four gating states, in which Pi permeates a constriction site via a "knock-kiss-kick" process. By contrast, KIDINS220 delicately stabilizes XPR1 in a closed conformation through multiple mechanisms, one of which involves trapping the XPR1 α1 helix-critical for InsP8 binding-within an interaction hub. InsP8 serves as a key to release KIDINS220's restraint, reinforcing a "key-to-locks" mechanism to safeguard the stepwise activation. Additionally, our study provides direct structural insights into XPR1-associated neuronal disorders and highlights the evolutionary conservation and divergence among XPR1 orthologs, offering a comprehensive understanding of Pi homeostasis across species.

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Primary Citation of related structures