9JU4 image
Deposition Date 2024-10-07
Release Date 2025-01-15
Last Version Date 2025-01-15
Entry Detail
PDB ID:
9JU4
Keywords:
Title:
Crystal structure of the Thermotoga maritima cold shock protein mutant Est#13 in complex with AacEst
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha/beta hydrolase fold-3 domain protein
Gene (Uniprot):Aaci_2875
Chain IDs:A
Chain Length:310
Number of Molecules:1
Biological Source:Alicyclobacillus acidocaldarius
Polymer Type:polypeptide(L)
Molecule:The Thermotoga maritima cold shock protein mutant binding to AacEst
Chain IDs:B
Chain Length:66
Number of Molecules:1
Biological Source:Thermotoga maritima
Primary Citation
Heat-sterilizable antibody mimics designed on the cold shock protein scaffold from hyperthermophile Thermotoga maritima.
Protein Sci. 34 e70018 e70018 (2025)
PMID: 39724358 DOI: 10.1002/pro.70018

Abstact

Antibodies and antibody mimics are extensively used in the pharmaceutical industry, where stringent safety standards are required. Implementing heat sterilization during or after the manufacturing process could help prevent contamination by viruses and bacteria. However, conventional antibodies and antibody mimics are not suitable for heat sterilization because they irreversibly denature at high temperatures. In this study, we focused on the refolding property of the cold shock protein from the hyperthermophile Thermotoga maritima (TmCSP), which denatures at elevated temperatures but regains its native structure upon re-cooling. We designed and constructed a mutant library of TmCSP in which amino acid residues in its three surface loops were diversified. From the library, mutant TmCSPs that bind to each of eight target proteins were selected by phage and yeast surface display methods. We confirmed that the secondary structure and binding affinity of all the selected mutants were restored after heat treatment followed by cooling. Additionally, freeze-drying did not impair their binding affinity. The crystal structure of a mutant TmCSP in complex with its target, the esterase from Alicyclobacillus acidocaldarius, revealed specific interactions between them. These results clearly demonstrate the feasibility of creating heat-sterilizable antibody mimics using TmCSP as a scaffold.

Legend

Protein

Chemical

Disease

Primary Citation of related structures