ISDA: 9JTU

Deposition Date 2024-10-07

Release Date 2025-07-23

Last Version Date 2025-07-23

Entry Detail

PDB ID:

9JTU

Keywords:

DNA BINDING PROTEIN/DNA

Title:

CryoEM structure of mouse RAG SEC-1DNA (23RSS side)

Biological Source:

Source Organism:

Mus musculus (Taxon ID: 10090)
Escherichia coli (Taxon ID: 562)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.43 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V(D)J recombination-activating protein 1
Gene (Uniprot):Rag1
Chain IDs:A, C
Chain Length:1040
Number of Molecules:2
Biological Source:Mus musculus

UniProt ID:P15919 Pfam ID:PF12560, PF00097, PF12940, PF10426

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V(D)J recombination-activating protein 2
Gene (Uniprot):Rag2
Chain IDs:B, D
Chain Length:527
Number of Molecules:2
Biological Source:Mus musculus

UniProt ID:P21784 Pfam ID:PF13341, PF03089

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (30-MER)
Chain IDs:H (auth: F)
Chain Length:30
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (39-MER)
Chain IDs:E (auth: G)
Chain Length:39
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*AP*GP*GP*CP*CP*AP*GP*AP*TP*CP*CP*A)-3')
Chain IDs:I (auth: H)
Chain Length:13
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*GP*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*G)-3')
Chain IDs:J (auth: I)
Chain Length:13
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (30-MER)
Chain IDs:F (auth: L)
Chain Length:30
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (39-MER)
Chain IDs:G (auth: M)
Chain Length:39
Number of Molecules:1
Biological Source:Escherichia coli

Ligand Molecules

Primary Citation

CryoEM structure of mouse RAG SEC-23DNA

Chen, X, Yao, L, Yang, W, Gellert, M.Show

To Be Published ? ? ? (?)

Primary Citation of related structures