ISDA: 9JTS

Deposition Date 2024-10-07

Release Date 2025-07-23

Last Version Date 2026-02-04

Entry Detail

PDB ID:

9JTS

Keywords:

DNA BINDING PROTEIN/DNA

Title:

CryoEM structure of mouse RAG SEC-1DNA (12RSS side)

Biological Source:

Source Organism(s):

Mus musculus (Taxon ID: 10090)
Escherichia coli (Taxon ID: 562)

Expression System(s):

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.36 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V(D)J recombination-activating protein 1
Gene (Uniprot):Rag1
Chain IDs:A, C
Chain Length:1040
Number of Molecules:2
Biological Source:Mus musculus

UniProt ID:P15919 Pfam ID:PF10426, PF12940, PF12560, PF00097, PF26024, PF26025, PF26100, PF26101, PF26104, PF26105

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V(D)J recombination-activating protein 2
Gene (Uniprot):Rag2
Chain IDs:B, D
Chain Length:527
Number of Molecules:2
Biological Source:Mus musculus

UniProt ID:P21784 Pfam ID:PF03089, PF13341

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (30-MER)
Chain IDs:J (auth: F)
Chain Length:30
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (39-MER)
Chain IDs:F (auth: G)
Chain Length:39
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*AP*GP*GP*CP*CP*AP*GP*AP*TP*CP*CP*A)-3')
Chain IDs:I (auth: H)
Chain Length:13
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*GP*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*G)-3')
Chain IDs:E (auth: I)
Chain Length:13
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (30-MER)
Chain IDs:G (auth: L)
Chain Length:30
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (39-MER)
Chain IDs:H (auth: M)
Chain Length:39
Number of Molecules:1
Biological Source:Escherichia coli

Ligand Molecules

Primary Citation

How RAG1/2 evolved from ancestral transposases to initiate V(D)J recombination without transposition.

Chen, X, Yao, L, Li, W, Ma, S, Yuan, X, Yang, Y, Yuan, Y, Liu, Y, Liu, L, Wang, H, Gellert, M, Yang, W.Show

Proc.Natl.Acad.Sci.USA 122 e2512362122 e2512362122 (2025)

PMID: 40729386 DOI: 10.1073/pnas.2512362122

Primary Citation of related structures

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