9JQM image
Deposition Date 2024-09-27
Release Date 2025-08-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9JQM
Keywords:
Title:
X-ray structure of cytochrome P450 OleT from Lacicoccus alkaliphilus in complex with icosanoic acid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.44 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fatty-acid peroxygenase
Gene (Uniprot):SAMN02745189_00740
Chain IDs:A (auth: B), B (auth: A)
Chain Length:432
Number of Molecules:2
Biological Source:Lacicoccus alkaliphilus DSM 16010
Primary Citation
Unique structural features define the decarboxylation activity of a CYP152 fatty acid decarboxylase from Lacicoccus alkaliphilus.
J.Biol.Chem. 301 110397 110397 (2025)
PMID: 40543591 DOI: 10.1016/j.jbc.2025.110397

Abstact

Cytochrome P450 CYP152s catalyze decarboxylation of fatty acids to generate terminal alkenes, valuable compounds for various industries. Here, we identified, overexpressed, and characterized a new CYP152 enzyme from Lacicoccus alkaliphilus (OleTLA) and compared its biophysical and biochemical properties with the well-studied OleTJE from Jeotgalicoccus sp. 8456. Improved expression protocols gave the highest yields of CYP152 holoenzymes reported to date. OleTLA exhibits twice the catalytic turnover number of OleTJE when using hexadecanoic acid and H2O2 as substrates in 10% (v/v) ethanol (EtOH). The X-ray structure of OleTLA in complex with icosanoic acid revealed a unique flipped heme and a substrate tunnel configuration which are different than those of other CYP152 decarboxylases. Molecular dynamics simulations revealed that in the presence of EtOH, OleTLA displays structural dynamics which maintain structural interactions better than those of OleTJE. As I178 in OleTLA (equivalent to L176 in OleTJE) shows close interactions with its substrate during simulations, I178L of OleTLA and L176I of OleTJE variants were constructed and investigated for their activities. While L176I in OleTJE caused a significant loss of activity, I178L of OleTLA had activities that were equivalent to or greater than those of the wild-type enzyme, suggesting that overall scaffold of OleTLA is more amenable to mutation than OleTJE. Stopped-flow investigations of OleTLA reactions indicated that EtOH increases the rate constant of Compound I formation. We also identified a new redox partner system, ferredoxin and ferredoxin reductase that can function as effective electron donors for both in vitro and in vivo systems of CYP152s.

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