9JPU image
Deposition Date 2024-09-26
Release Date 2025-07-23
Last Version Date 2025-07-23
Entry Detail
PDB ID:
9JPU
Keywords:
DNA BINDING PROTEIN/DNA
Title:
CryoEM structure of mouse RAG SEC-PHD
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Escherichia coli (Taxon ID: 562)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.25 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9JPU validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V(D)J recombination-activating protein 1
Gene (Uniprot):Rag1
Chain IDs:A, C
Chain Length:1040
Number of Molecules:2
Biological Source:Mus musculus
UniProt ID:P15919 Pfam ID:PF12560, PF00097, PF10426, PF12940
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:V(D)J recombination-activating protein 2
Gene (Uniprot):Rag2
Chain IDs:B, D, I (auth: E)
Chain Length:527
Number of Molecules:3
Biological Source:Mus musculus
UniProt ID:P21784 Pfam ID:PF03089, PF13341
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*GP*CP*TP*GP*TP*AP*TP*CP*AP*CP*TP*GP*TP*G)-3')
Chain IDs:E (auth: F)
Chain Length:15
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*TP*TP*GP*CP*AP*TP*CP*AP*CP*TP*GP*TP*G)-3')
Chain IDs:F (auth: G)
Chain Length:14
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*AP*CP*AP*GP*TP*GP*AP*TP*AP*CP*AP*GP*CP*C)-3')
Chain IDs:G (auth: L)
Chain Length:15
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*AP*CP*AP*GP*TP*GP*AP*TP*GP*CP*AP*AP*A)-3')
Chain IDs:H (auth: M)
Chain Length:14
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
CA
ZN
Primary Citation
CryoEM structure of mouse RAG SEC-PHD
To Be Published ? ? ? (?)
Primary Citation of related structures
9JPU