9JPB image
Deposition Date 2024-09-25
Release Date 2025-10-22
Last Version Date 2025-10-22
Entry Detail
PDB ID:
9JPB
Keywords:
PHOTOSYNTHESIS
Title:
Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with EDTA-containing solutions
Biological Source:
Source Organism:
Dinoroseobacter shibae DFL 12 = DSM 16493 (Taxon ID: 398580)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9JPB validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center cytochrome c subunit
Gene (Uniprot):pufC
Chain IDs:MA (auth: C)
Chain Length:360
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493
UniProt ID:A8LQ18 Pfam ID:PF02276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein H chain
Gene (Uniprot):puhA
Chain IDs:LA (auth: H)
Chain Length:256
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493
UniProt ID:A8LQ33 Pfam ID:PF03967, PF05239
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Gene (Uniprot):pufL
Chain IDs:KA (auth: L)
Chain Length:279
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493
UniProt ID:A8LQ16 Pfam ID:PF00124
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):pufM
Chain IDs:JA (auth: M)
Chain Length:330
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493
UniProt ID:A8LQ17 Pfam ID:PF00124
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein O chain
Gene (Uniprot):Dshi_1314
Chain IDs:B (auth: O)
Chain Length:239
Number of Molecules:1
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493
UniProt ID:A8LIU2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein alpha chain
Gene (Uniprot):pufA
Chain IDs:A (auth: P), C (auth: V), E (auth: S), G (auth: T), I (auth: Q), K (auth: R), O (auth: 1), Q (auth: N), S (auth: K), U (auth: J), W (auth: I), Y (auth: G), AA (auth: F), CA (auth: E), EA (auth: D), GA (auth: B), IA (auth: A)
Chain Length:53
Number of Molecules:17
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493
UniProt ID:A8LQ15 Pfam ID:PF00556
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antenna pigment protein beta chain
Gene (Uniprot):pufB
Chain IDs:D (auth: v), F (auth: t), H (auth: s), J (auth: r), L (auth: q), M (auth: p), N (auth: 2), P (auth: n), R (auth: k), T (auth: j), V (auth: i), X (auth: g), Z (auth: f), BA (auth: e), DA (auth: d), FA (auth: b), HA (auth: a)
Chain Length:49
Number of Molecules:17
Biological Source:Dinoroseobacter shibae DFL 12 = DSM 16493
UniProt ID:A8LQ14 Pfam ID:PF00556
Ligand Molecules
BCL
BPH
CDL
FE
HEC
LMT
MW9
SPN
U10
Primary Citation
Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with EDTA-containing solutions
To Be Published ? ? ? (?)
Primary Citation of related structures
9JPB