ISDA

Deposition Date 2024-09-25

Release Date 2025-10-22

Last Version Date 2025-10-22

Entry Detail

PDB ID:

9JOR

Keywords:

ISOMERASE

Title:

structure of phage T4 topoisomerase II central domain bound with DNA

Biological Source:

Source Organism:

Escherichia phage T4 (Taxon ID: 10665)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.09 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA topoisomerase large subunit,DNA topoisomerase small subunit
Gene (Uniprot):39, 60
Chain IDs:B (auth: A), D (auth: B)
Chain Length:682
Number of Molecules:2
Biological Source:Escherichia phage T4

UniProt ID:P09176,P23992 Pfam ID:PF02518, PF00204, PF16898

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA topoisomerase medium subunit
Gene (Uniprot):52
Chain IDs:A (auth: C), C (auth: D)
Chain Length:452
Number of Molecules:2
Biological Source:Escherichia phage T4

UniProt ID:P07065 Pfam ID:PF00521

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*GP*TP*GP*TP*GP*TP*AP*TP*AP*TP*AP*TP*AP*CP*AP*CP*AP*TP*AP*TP*AP*TP*A)-3')
Chain IDs:E
Chain Length:24
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*TP*AP*TP*AP*TP*GP*TP*GP*TP*AP*TP*AP*TP*AP*TP*AP*CP*AP*CP*AP*CP*AP*T)-3')
Chain IDs:F
Chain Length:24
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

Primary Citation

structure of phage T4 topoisomerase II central domain bound with DNA

Chen, Y.T, Xin, Y.H, Xian, R.Q.Show

To be published ? ? ? (?)

Primary Citation of related structures