9JH8 image
Deposition Date 2024-09-09
Release Date 2025-07-30
Last Version Date 2025-07-30
Entry Detail
PDB ID:
9JH8
Keywords:
DNA BINDING PROTEIN/DNA
Title:
Cryo-EM structure of CpAgo_gDNA-tg_ssDNA monomeric ternary complex
Biological Source:
Source Organism:
Clostridium perfringens (Taxon ID: 1502)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.81 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9JH8 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Clostridium perfringens Argonaute (CpAgo)
Chain IDs:A
Chain Length:751
Number of Molecules:1
Biological Source:Clostridium perfringens
UniProt ID:A0AAW4IU58
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3')
Chain IDs:B (auth: C)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*CP*T*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3')
Chain IDs:C (auth: E)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
MN
Primary Citation
Dimeric state and novel nucleotide-binding pocket drive CpAgo-mediated DNA cleavage
To Be Published ? ? ? (?)
Primary Citation of related structures
9JH8
Feedback Form
Name
Email
Institute
Feedback