9JEJ image
Deposition Date 2024-09-03
Release Date 2024-12-11
Last Version Date 2024-12-11
Entry Detail
PDB ID:
9JEJ
Keywords:
Title:
Crystal structure of human EP300 KIX domain (L644C mutant)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
I 4 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Histone acetyltransferase p300
Gene (Uniprot):EP300
Mutations:L644C
Chain IDs:A, B, C
Chain Length:101
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Comparative crystal structure analysis of the human EP300 and CBP KIX domains.
Biochem.Biophys.Res.Commun. 741 151064 151064 (2024)
PMID: 39612645 DOI: 10.1016/j.bbrc.2024.151064

Abstact

Small-cell lung cancer (SCLC) is highly lethal because the tumors grow and metastasize rapidly. Effective treatments for SCLC are lacking currently. A recent study demonstrated that the E1A binding protein P300 (EP300) KIX domain has pro-tumorigenic activity and is selectively involved in the development and growth of SCLC. These findings suggest the possibility of developing small-molecule inhibitors of EP300 KIX as new targeted therapies for SCLC. In this study, we reported the crystal structure of the human EP300 KIX domain at 2.9 Å resolution except for a flexible loop and C-terminal end. The overall structure was almost identical to that of the cAMP response element-binding protein (CBP) KIX. Nine EP300 KIX residues were different from those of CBP KIX. Among these non-strictly conserved residues, Ala627, which corresponds to Asp647 in CBP KIX, reduces the negative surface potential. Asn581 and Arg613 contributed to the formation of additional hydrogen bonds in the EP300 KIX structure. Further structural analysis revealed that the hydrophobic residues that form the allosteric network in CBP KIX were well conserved in the EP300 KIX structure. This study lays the groundwork for structure-based drug design for SCLC.

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Primary Citation of related structures