9JEB image
Deposition Date 2024-09-03
Release Date 2025-09-03
Last Version Date 2025-09-03
Entry Detail
PDB ID:
9JEB
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv N1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Host Organism:
Trichoplusia
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.30 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 62
9JEB validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N1 scFv
Chain IDs:A, C
Chain Length:247
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:B, D
Chain Length:197
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF09408
Ligand Molecules
NAG
Primary Citation
Mining antibody functionality via AI-guided structural landscape profiling
To Be Published ? ? ? (?)
Primary Citation of related structures
9JEB