9JC2 image
Deposition Date 2024-08-28
Release Date 2025-07-09
Last Version Date 2025-07-16
Entry Detail
PDB ID:
9JC2
Title:
Engineering of ATP synthase Fo
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.96 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit a
Chain IDs:A, B, C
Chain Length:237
Number of Molecules:3
Biological Source:Bacillus sp. PS3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase gamma chain
Gene (Uniprot):uncG
Chain IDs:D
Chain Length:285
Number of Molecules:1
Biological Source:Bacillus sp. PS3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase epsilon chain
Gene (Uniprot):uncC
Chain IDs:E
Chain Length:87
Number of Molecules:1
Biological Source:Bacillus sp. PS3
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit b
Chain IDs:F, G, H, I, J, K
Chain Length:169
Number of Molecules:6
Biological Source:Bacillus sp. PS3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP synthase subunit c
Gene (Uniprot):atpE
Chain IDs:L, M, N, O, P, Q, R, S, T, U
Chain Length:72
Number of Molecules:10
Biological Source:Bacillus sp. PS3
Ligand Molecules
Primary Citation
Engineering of ATP synthase for enhancement of proton-to-ATP ratio.
Nat Commun 16 5410 5410 (2025)
PMID: 40610443 DOI: 10.1038/s41467-025-61227-w

Abstact

FoF1-ATP synthase (FoF1) interconverts the energy of the proton motive force (pmf) and that of ATP through the mechanical rotation. The H+/ATP ratio, one of the most crucial parameters in bioenergetics, varies among species due to differences in the number of H+-binding c-subunits, resulting in H+/ATP ratios ranging from 2.7 to 5. In this study, we seek to significantly enhance the H+/ATP ratio by employing an alternative approach that differs from that of nature. We engineer FoF1 to form multiple peripheral stalks, each bound to a proton-conducting a-subunit. The engineered FoF1 exhibits an H+/ATP ratio of 5.8, surpassing the highest ratios found in naturally occurring FoF1s, enabling ATP synthesis under low pmf conditions where wild-type enzymes cannot synthesize ATP. Structural analysis reveals that the engineered FoF1 forms up to three peripheral stalks and a-subunits. This study not only provides valuable insights into the H+-transport mechanism of FoF1 but also opens up possibilities for engineering the foundation of cellular bioenergetics.

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Primary Citation of related structures
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