9JAO image
Deposition Date 2024-08-25
Release Date 2025-04-30
Last Version Date 2025-04-30
Entry Detail
PDB ID:
9JAO
Keywords:
DNA BINDING PROTEIN/DNA
Title:
The structure of SMARCAD1 bound to the hexasome in the presence of ADP-BeFx
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Xenopus laevis (Taxon ID: 8355)
synthetic construct (Taxon ID: 32630)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9JAO validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:C (auth: B), E (auth: F)
Chain Length:103
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:P62799 Pfam ID:PF15511
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
Gene (Uniprot):SMARCAD1
Chain IDs:A (auth: C), J (auth: K)
Chain Length:845
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q9H4L7 Pfam ID:PF00176, PF00271
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3
Gene (Uniprot):LOC121398065
Chain IDs:B (auth: D), D (auth: E)
Chain Length:136
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:A0A310TTQ1 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A
Chain IDs:F (auth: G)
Chain Length:130
Number of Molecules:1
Biological Source:Xenopus laevis
UniProt ID:P06897
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:G (auth: H)
Chain Length:123
Number of Molecules:1
Biological Source:Xenopus laevis
UniProt ID:P02281 Pfam ID:PF00125
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (157-MER)
Chain IDs:H (auth: I)
Chain Length:157
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (157-MER)
Chain IDs:I (auth: J)
Chain Length:157
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
ADP
BEF
MG
Primary Citation
Nucleosome intermediate preference of SMARCAD1 chromatin remodeler, and the structural insights
To Be Published ? ? ? (?)
Primary Citation of related structures
9JAO