ISDA: 9JA3

Deposition Date 2024-08-24

Release Date 2025-09-03

Last Version Date 2025-09-03

Entry Detail

PDB ID:

9JA3

Keywords:

REPLICATION

Title:

Herpes simplex virus type 1 polymerase machinery in complex with duplex DNA, acyclovir triphosphate and calcium ions

Biological Source:

Source Organism:

Human herpesvirus 1 (strain 17) (Taxon ID: 10299)
synthetic construct (Taxon ID: 32630)

Host Organism:

Insect expression vector pBlueBacmsGCA1

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.15 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase
Gene (Uniprot):UL30
Chain IDs:A
Chain Length:1235
Number of Molecules:1
Biological Source:Human herpesvirus 1 (strain 17)

UniProt ID:G8HBE4 Pfam ID:PF03104, PF00136, PF11590

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase processivity factor
Gene (Uniprot):UL42
Chain IDs:B
Chain Length:513
Number of Molecules:1
Biological Source:Human herpesvirus 1 (strain 17)

UniProt ID:P10226 Pfam ID:PF02282

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*GP*GP*CP*CP*AP*TP*AP*CP*GP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*TP*AP*C)-3')
Chain IDs:D (auth: P)
Chain Length:23
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (27-MER)
Chain IDs:C (auth: T)
Chain Length:27
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

AVP

Primary Citation

Structural basis of herpes simplex type 1 virus DNA polymerase holoenzyme in DNA replication and acyclovir inhibition and proof-reading

Wu, Y.Q, Chen, X.L, Jiang, Z.Y, Li, D.Y, Zhang, Z.Y, Dong, C.J.Show

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