9J7Y image
Deposition Date 2024-08-20
Release Date 2025-01-15
Last Version Date 2026-01-28
Entry Detail
PDB ID:
9J7Y
Title:
the complex structure of MPXV M1R and nanobody M1R-01
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 61
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Entry-fusion complex associated protein OPG095
Gene (Uniprot):OPG099
Chain IDs:A (auth: G)
Chain Length:191
Number of Molecules:1
Biological Source:Monkeypox virus
Polymer Type:polypeptide(L)
Molecule:nanobody M1R-01
Chain IDs:B (auth: H)
Chain Length:123
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Identification of neutralizing nanobodies protecting against poxvirus infection.
Cell Discov 11 31 31 (2025)
PMID: 40133273 DOI: 10.1038/s41421-025-00771-7

Abstact

An outbreak of mpox has triggered concerns regarding the adequacy of intervention strategies. Passive immunity conferred by neutralizing antibodies exhibits potential in the prophylaxis and treatment of orthopoxvirus infections. Despite this, the investigations of effective antibody therapeutics have been hindered by the varied nature of orthopoxvirus envelope proteins and the intricate mechanisms underpinning viral invasion. Our study involves the production of six mpox virus (MPXV) envelope proteins, which are relatively conservative and considered to play a role in the neutralization process. We employed a synthetic nanobody (Nb) library to derive a broad array of specific Nbs against these viral proteins. We identified a cross-reactive Nb, termed M1R-01, which targets the M1R protein and effectively neutralizes both vaccinia virus (VACV) and MPXV. Notably, the M1R-01-based antibody strategy provided optimal protection against a lethal VACV challenge in mice. Additionally, we determined the crystal structure of the M1R-Nb complex, uncovering novel binding attributes of M1R-01 and detailed conformational epitope information. This work provides a promising candidate for the therapy and prophylaxis of orthopoxvirus infections.

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Chemical

Disease

Primary Citation of related structures
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