9J6K image
Deposition Date 2024-08-16
Release Date 2025-06-04
Last Version Date 2025-06-25
Entry Detail
PDB ID:
9J6K
Keywords:
Title:
HBx complexed with DDB1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Hepatitis B virus (Taxon ID: 10407)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.68 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA damage-binding protein 1
Gene (Uniprot):DDB1
Chain IDs:A
Chain Length:1144
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein X
Gene (Uniprot):X
Chain IDs:B
Chain Length:171
Number of Molecules:1
Biological Source:Hepatitis B virus
Ligand Molecules
Primary Citation
Structural basis of the hepatitis B virus X protein in complex with DDB1.
Proc.Natl.Acad.Sci.USA 122 e2421325122 e2421325122 (2025)
PMID: 40512786 DOI: 10.1073/pnas.2421325122

Abstact

A cure for chronic hepatitis B requires eliminating or permanently silencing covalently closed circular DNA (cccDNA). A pivotal target of this approach is the hepatitis B virus (HBV) X protein (HBx), which is a key factor that promotes transcription from cccDNA. However, the HBx structure remains unsolved. Here, we present the cryoelectron microscopy structure of HBx in complex with DDB1, which is an essential complex for cccDNA transcription. In this structure, hydrophobic interactions within HBx were identified, and mutational analysis highlighted their importance in the HBV life cycle. Our biochemical analysis revealed that the HBx-DDB1 complex directly interacts simultaneously with NSE3, which is a component of the SMC5/6 complex, and Spindlin1. Additionally, HBx-DDB1 complex dynamics were explored via high-speed atomic force microscopy. These findings provide comprehensive insights into the structure and function of HBx in HBV replication.

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Primary Citation of related structures
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