ISDA: 9J64

Deposition Date 2024-08-14

Release Date 2025-09-03

Last Version Date 2025-09-03

Entry Detail

PDB ID:

9J64

Keywords:

LIGASE

Title:

Cryo-EM structure of neddylated Cul2-Rbx1-EloBC-FEM1B homodimer complexed with FNIP1 degron

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Escherichia coli K-12 (Taxon ID: 83333)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.28 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cullin-2
Gene (Uniprot):CUL2
Chain IDs:A, B (auth: D)
Chain Length:751
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q13617 Pfam ID:PF00888, PF10557 EC:2.3.2.32

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase RBX1
Gene (Uniprot):RBX1
Chain IDs:C (auth: E), F (auth: H)
Chain Length:108
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62877 Pfam ID:PF12678 EC:2.3.2.27

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Elongin-C
Gene (Uniprot):ELOC
Chain IDs:D (auth: F)
Chain Length:98
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q15369 Pfam ID:PF03931

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Elongin-B
Gene (Uniprot):ELOB
Chain IDs:E (auth: G)
Chain Length:104
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q15370 Pfam ID:PF00240

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein fem-1 homolog B
Gene (Uniprot):FEM1B
Chain IDs:G (auth: I)
Chain Length:628
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9UK73 Pfam ID:PF12796

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Maltose/maltodextrin-binding periplasmic protein,Folliculin interacting protein 1
Gene (Uniprot):FNIP1, malE
Chain IDs:H (auth: J)
Chain Length:467
Number of Molecules:1
Biological Source:Escherichia coli K-12, Homo sapiens

UniProt ID:P0AEX9,J3KNG8 Pfam ID:PF01547, PF14637 EC:7.5.2.1

Ligand Molecules

Primary Citation

Neddylation induces an intermediate auto-inhibited CRL2FEM1B E3 ubiquitin ligase

Dai, Z, Liang, L, Yin, Y.X.Show

To Be Published ? ? ? (?)

Primary Citation of related structures