9J4S image
Deposition Date 2024-08-10
Release Date 2025-08-13
Last Version Date 2025-08-13
Entry Detail
PDB ID:
9J4S
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
Structural basis for recognition of SARS-CoV-2 conserved nucleocapside epitopes by dominant T cell receptors
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.95 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
9J4S validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HLA class I histocompatibility antigen, B alpha chain
Gene (Uniprot):HLA-B
Chain IDs:E (auth: C), H (auth: F)
Chain Length:276
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P01889 Pfam ID:PF00129, PF07654
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:F (auth: D), I (auth: H)
Chain Length:100
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P61769 Pfam ID:PF07654
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleoprotein
Gene (Uniprot):N
Chain IDs:G (auth: E), J
Chain Length:9
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC9
Polymer Type:polypeptide(L)
Molecule:T cell receptor CLA1 beta
Chain IDs:A (auth: G), C (auth: A)
Chain Length:245
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T cell receptor CLA1 alpha
Chain IDs:B (auth: I), D (auth: B)
Chain Length:208
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
GOL
SO4
Primary Citation
Structural basis for recognition of SARS-CoV-2 conserved nucleocapside epitopes by dominant T cell receptors
To Be Published ? ? ? (?)
Primary Citation of related structures
9J4S