9J3V image
Deposition Date 2024-08-08
Release Date 2025-10-08
Last Version Date 2025-10-15
Entry Detail
PDB ID:
9J3V
Keywords:
Title:
Fe2+/Fe2+ PolF-L-isoleucine complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative molybdopterin oxidoreductase
Gene (Uniprot):polF
Chain IDs:A, B, C, D, E, F
Chain Length:275
Number of Molecules:6
Biological Source:Streptomyces asoensis
Primary Citation
A two-metalloenzyme cascade constructs the azetidine-containing pharmacophore.
Nat.Chem. ? ? ? (2025)
PMID: 41028918 DOI: 10.1038/s41557-025-01949-y

Abstact

Azetidine is a prominent pharmacophore present in dozens of drug-related molecules of both natural and synthetic origins. But how nature builds this moiety has long remained enigmatic. Here we address the full deciphering of a two-metalloenzyme cascade leading to polyoximic acid, an azetidine-containing moiety of the fungicide polyoxin. We demonstrate that the PolE enzyme functions as an Fe2+/pterin-dependent L-isoleucine desaturase. Moreover we illustrate that PolF is a new member of the emerging haem-oxygenase-like diiron oxidases, converting the desaturated L-isoleucine to polyoximic acid via an intramolecular C-N cyclization. Remarkably, we also establish that PolF exhibits dual functionality, orchestrating the sequential desaturation and cyclization with L-isoleucine as the initial substrate. Finally, our combined structural and quantum-mechanics/molecular-mechanics studies show that the PolF enzyme employs an extraordinary mechanism for the construction of the azetidine-containing moiety. These findings expand our knowledge on the catalysis of metalloenzymes and open the way for rational access of more azetidine-related molecules.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback