9J3L image
Deposition Date 2024-08-08
Release Date 2025-03-19
Last Version Date 2025-07-23
Entry Detail
PDB ID:
9J3L
Title:
ATP bound Arabidopsis ATP/ADP translocator AtNTT1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.72 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ADP,ATP carrier protein 1, chloroplastic
Gene (Uniprot):AATP1
Chain IDs:A
Chain Length:610
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Polymer Type:polypeptide(L)
Molecule:nanobody: B-D7
Chain IDs:B (auth: C)
Chain Length:120
Number of Molecules:1
Biological Source:Vicugna pacos
Ligand Molecules
Primary Citation
Structure and mechanism of the plastid/parasite ATP/ADP translocator.
Nature 641 797 804 (2025)
PMID: 40074904 DOI: 10.1038/s41586-025-08743-3

Abstact

Adenosine triphosphate (ATP) is the principal energy currency of all living cells1,2. Metabolically impaired obligate intracellular parasites, such as the human pathogens Chlamydia trachomatis and Rickettsia prowazekii, can acquire ATP from their host cells through a unique ATP/adenosine diphosphate (ADP) translocator, which mediates the import of ATP into and the export of ADP and phosphate out of the parasite cells, thus allowing the exploitation of the energy reserves of host cells (also known as energy parasitism). This type of ATP/ADP translocator also exists in the obligate intracellular endosymbionts of protists and the plastids of plants and algae and has been implicated to play an important role in endosymbiosis3-31. The plastid/parasite type of ATP/ADP translocator is phylogenetically and functionally distinct from the mitochondrial ATP/ADP translocator, and its structure and transport mechanism are still unknown. Here we report the cryo-electron microscopy structures of two plastid/parasite types of ATP/ADP translocators in the apo and substrate-bound states. The ATP/ADP-binding pocket is located at the interface between the N and C domains of the translocator, and a conserved asparagine residue within the pocket is critical for substrate specificity. The translocator operates through a rocker-switch alternating access mechanism involving the relative rotation of the two domains as rigid bodies. Our results provide critical insights for understanding ATP translocation across membranes in energy parasitism and endosymbiosis and offer a structural basis for developing drugs against obligate intracellular parasites.

Legend

Protein

Chemical

Disease

Primary Citation of related structures