9J2F image
Entry Detail
PDB ID:
9J2F
EMDB ID:
Keywords:
Title:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-08-06
Release Date:
2024-12-18
Method Details:
Experimental Method:
Resolution:
2.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Antenna complex alpha/beta subunit domain-containing protein
Chain IDs:E (auth: A), H (auth: D), K (auth: I), N, Q, T, W, Z, CA (auth: 3), FA (auth: 6), IA (auth: 9), LA (auth: b), OA (auth: e), RA (auth: h), UA (auth: k), XA (auth: n), AB (auth: q)
Chain Length:69
Number of Molecules:17
Biological Source:Blastochloris tepida
Polymer Type:polypeptide(L)
Description:Antenna complex alpha/beta subunit domain-containing protein
Chain IDs:F (auth: B), I (auth: E), L (auth: J), O, R, U, X, AA (auth: 1), DA (auth: 4), GA (auth: 7), JA (auth: 0), MA (auth: c), PA (auth: f), SA (auth: i), VA (auth: l), YA (auth: o), BB (auth: r)
Chain Length:69
Number of Molecules:17
Biological Source:Blastochloris tepida
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center cytochrome c subunit
Chain IDs:A (auth: C)
Chain Length:354
Number of Molecules:1
Biological Source:Blastochloris tepida
Polymer Type:polypeptide(L)
Description:Light-harvesting protein B-1015 gamma chain
Chain IDs:J (auth: F), M (auth: K), P, S, V, Y, BA (auth: 2), EA (auth: 5), HA (auth: 8), KA (auth: a), NA (auth: d), QA (auth: g), TA (auth: j), WA (auth: m), ZA (auth: p)
Chain Length:57
Number of Molecules:15
Biological Source:Blastochloris tepida
Polymer Type:polypeptide(L)
Description:Light-harvesting protein gamma1
Chain IDs:G
Chain Length:56
Number of Molecules:1
Biological Source:Blastochloris tepida
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center subunit H
Chain IDs:D (auth: H)
Chain Length:260
Number of Molecules:1
Biological Source:Blastochloris tepida
Polymer Type:polypeptide(L)
Description:Reaction center protein L chain
Chain IDs:B (auth: L)
Chain Length:274
Number of Molecules:1
Biological Source:Blastochloris tepida
Polymer Type:polypeptide(L)
Description:Reaction center protein M chain
Chain IDs:C (auth: M)
Chain Length:57
Number of Molecules:1
Biological Source:Blastochloris tepida
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME D MET modified residue
Primary Citation
The Thermal-Stable LH1-RC Complex of a Hot Spring Purple Bacterium Powers Photosynthesis with Extremely Low-Energy Near-Infrared Light.
Biochemistry 64 170 179 (2025)
PMID: 39680849 DOI: 10.1021/acs.biochem.4c00506

Abstact

Blastochloris (Blc.) tepida is a hot spring purple nonsulfur phototrophic bacterium that contains bacteriochlorophyll (BChl) b. Here, we present a 2.21 Å cryo-EM structure of the thermostable light-harvesting 1-reaction center (LH1-RC) complex from Blc. tepida. The LH1 ring comprises 16 circularly arranged αβγ-subunits plus one αβ-subunit that surround the RC complex composed of C-, H-, L-, and M-subunits. In a comparative study, the Blc. tepida LH1-RC showed numerous electrostatic and hydrophobic interactions both within the LH1 complex itself and between the LH1 and the RC complexes that are absent from the LH1-RC complex of its mesophilic counterpart, Blc. viridis. These additional interactions result in a tightly packed LH1-RC architecture with a reduced accessible surface area per volume that enhances the thermal stability of the Blc. tepida complex and allows the light reactions of photosynthesis to proceed at hot spring temperatures. Moreover, based on high-resolution structural information combined with spectroscopic evidence, the unique photosynthetic property of the Blc. tepida LH1-RC─absorption of energy-poor near-infrared light beyond 1000 nm─can be attributed to strong hydrogen-bonding interactions between the C3-acetyl C═O of the LH1 BChl b and two LH1 α-Trp residues, structural rigidity of the LH1, and the enhanced exciton coupling of the LH1 BChls of this thermophile.

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