9J2A image
Deposition Date 2024-08-06
Release Date 2025-10-08
Last Version Date 2025-10-15
Entry Detail
PDB ID:
9J2A
Keywords:
Title:
Fe/Fe-SzPolF-2 complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SzPolF
Gene (Uniprot):D7M15_25730
Chain IDs:A, B
Chain Length:289
Number of Molecules:2
Biological Source:Streptomyces sp. Z26
Primary Citation
A two-metalloenzyme cascade constructs the azetidine-containing pharmacophore.
Nat.Chem. ? ? ? (2025)
PMID: 41028918 DOI: 10.1038/s41557-025-01949-y

Abstact

Azetidine is a prominent pharmacophore present in dozens of drug-related molecules of both natural and synthetic origins. But how nature builds this moiety has long remained enigmatic. Here we address the full deciphering of a two-metalloenzyme cascade leading to polyoximic acid, an azetidine-containing moiety of the fungicide polyoxin. We demonstrate that the PolE enzyme functions as an Fe2+/pterin-dependent L-isoleucine desaturase. Moreover we illustrate that PolF is a new member of the emerging haem-oxygenase-like diiron oxidases, converting the desaturated L-isoleucine to polyoximic acid via an intramolecular C-N cyclization. Remarkably, we also establish that PolF exhibits dual functionality, orchestrating the sequential desaturation and cyclization with L-isoleucine as the initial substrate. Finally, our combined structural and quantum-mechanics/molecular-mechanics studies show that the PolF enzyme employs an extraordinary mechanism for the construction of the azetidine-containing moiety. These findings expand our knowledge on the catalysis of metalloenzymes and open the way for rational access of more azetidine-related molecules.

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Primary Citation of related structures