9IZF image
Deposition Date 2024-08-01
Release Date 2025-01-01
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9IZF
Title:
Cryo-EM structure of LPA1-Gi complex with LPA
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.14 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(i) subunit alpha-1
Gene (Uniprot):GNAI1
Chain IDs:B (auth: A)
Chain Length:354
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene (Uniprot):GNB1
Chain IDs:C (auth: B)
Chain Length:382
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Gene (Uniprot):Gng2
Chain IDs:D (auth: C)
Chain Length:70
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562,Lysophosphatidic acid receptor 1,LgBiT tag
Gene (Uniprot):cybC, LPAR1
Chain IDs:A (auth: R)
Chain Length:651
Number of Molecules:1
Biological Source:Escherichia coli, Homo sapiens, synthetic construct
Polymer Type:polypeptide(L)
Molecule:scFv16
Chain IDs:E (auth: S)
Chain Length:248
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Structural insights into the engagement of lysophosphatidic acid receptor 1 with different G proteins.
J.Struct.Biol. 217 108164 108164 (2024)
PMID: 39725093 DOI: 10.1016/j.jsb.2024.108164

Abstact

Lysophosphatidic acid (LPA) and sphingosine-1-phosphate (S1P) are bioactive lysophospholipids derived from cell membranes that activate the endothelial differentiation gene family of G protein-coupled receptors. Activation of these receptors triggers multiple downstream signaling cascades through G proteins such as Gi/o, Gq/11, and G12/13. Therefore, LPA and S1P mediate several physiological processes, including cytoskeletal dynamics, neurite retraction, cell migration, cell proliferation, and intracellular ion fluxes. The basis for the G-protein coupling selectivity of EDG receptors, however, remains unknown. Here, we present cryo-electron microscopy structures of LPA-activated LPA1 in complexes with Gi, Gq, and G13 heterotrimers. Comparison of the three LPA1-G protein structures shows clearly different conformations of intracellular loop 2 (ICL2) and ICL3 that are likely induced by the different Gα protein interfaces. Interestingly, this G-protein interface interaction is a common feature of LPA and S1P receptors. Our findings provide clues to understanding the promiscuity of G-protein coupling in the endothelial differentiation gene family.

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Primary Citation of related structures