9IUR image
Deposition Date 2024-07-22
Release Date 2025-03-12
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9IUR
Keywords:
Title:
Crystal structure of CcmS from Synechocystis sp. PCC 6803
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 41
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Slr1911 protein
Gene (Uniprot):slr1911
Chain IDs:A, B, C, D, E
Chain Length:136
Number of Molecules:5
Biological Source:Synechocystis sp. PCC 6803 substr. Kazusa
Ligand Molecules
Primary Citation
Assembly mechanism of the beta-carboxysome shell mediated by the chaperone CcmS.
New Phytol. 246 1676 1690 (2025)
PMID: 40125605 DOI: 10.1111/nph.70086

Abstact

Carboxysomes are self-assembled bacterial microcompartments (BMCs) that encapsulate the enzymes RuBisCO and carbonic anhydrase into a proteinaceous shell, enhancing the efficiency of photosynthetic carbon fixation. The chaperone CcmS was reported to participate in the assembly of β-carboxysomes; however, the underlying molecular mechanism remains elusive. We report the crystal structure of CcmS from Synechocystis sp. PCC 6803, revealing a monomer of α/β fold. Moreover, its complex structures with two types of BMC hexamers, CcmK1 homohexamer and CcmK1-CcmK2 heterohexamer, reveal a same pattern of CcmS binding to the featured C-terminal segment of CcmK1. Upon binding to CcmS, this C-terminal segment of CcmK1 is folded into an amphipathic α-helix protruding outward that might function as a hinge to crosslink adjacent BMC-H hexamers, thereby facilitating concerted and precise assembly of the β-carboxysome shell. Deletion of the ccmS gene or the 8-residue C-terminal coding region of ccmK1 resulted in the formation of aberrant and fewer carboxysomes, suppressed photosynthetic capacity in Synechocystis sp. PCC 6803. These findings enable us to propose a putative model for the chaperone-assisted assembly of β-carboxysome shell and provide clues for the design and engineering of efficient carbon fixation machinery.

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