9ITF image
Deposition Date 2024-07-20
Release Date 2025-06-04
Last Version Date 2025-06-04
Entry Detail
PDB ID:
9ITF
Keywords:
Title:
Cryo-EM structure of full-length phyB(Y276H)-PIF6beta complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transcription factor PIF6
Gene (Uniprot):PIF6
Chain IDs:C (auth: B)
Chain Length:241
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Polymer Type:polypeptide(L)
Molecule:Phytochrome B
Gene (Uniprot):PHYB
Mutations:Y276H
Chain IDs:A (auth: C), B (auth: A)
Chain Length:1226
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
Structural insight into PIF6-mediated red light signal transduction of plant phytochrome B.
Cell Discov 11 51 51 (2025)
PMID: 40404641 DOI: 10.1038/s41421-025-00802-3

Abstact

The red/far-red light receptor phytochrome B (phyB) plays essential roles in regulating various plant development processes. PhyB exists in two distinct photoreversible forms: the inactive Pr form and the active Pfr form. phyB-Pfr binds phytochrome-interacting factors (PIFs) to transduce red light signals. Here, we determined the cryo-electron microscopy (cryo-EM) structures of the photoactivated phyB-Pfr‒PIF6 complex, the constitutively active mutant phyBY276H‒PIF6 complex, and the truncated phyBNY276H‒PIF6 complex. In these structures, two parallel phyB-Pfr molecules interact with one PIF6 molecule. Red light-triggered rotation of the PΦB D-ring leads to the conversion of hairpin loops into α helices and the "head-to-head" reassembly of phyB-Pfr N-terminal photosensory modules. The interaction between phyB-Pfr and PIF6 influences the dimerization and transcriptional activation activity of PIF6, and PIF6 stabilizes the N-terminal extension of phyB-Pfr and increases the Pr→Pfr photoconversion efficiency of phyB. Our findings reveal the molecular mechanisms underlying Pr→Pfr photoconversion and PIF6-mediated red light signal transduction of phyB.

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