9IT8 image
Deposition Date 2024-07-19
Release Date 2024-09-11
Last Version Date 2025-05-14
Entry Detail
PDB ID:
9IT8
Keywords:
Title:
Crystal structure of the ternary complex of lactoperoxidase with nitric oxide and nitrite ion at 1.95 A resolution
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.24
R-Value Work:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lactoperoxidase
Gene (Uniprot):LPO
Chain IDs:A
Chain Length:595
Number of Molecules:1
Biological Source:Bos taurus
Primary Citation
Structure of the Complex of Lactoperoxidase With Nitric Oxide at 1.95 angstrom Resolution.
Proteins 93 1079 1089 (2025)
PMID: 39748619 DOI: 10.1002/prot.26797

Abstact

Lactoperoxidase (LPO) is a heme-containing mammalian enzyme that is found in the extracellular fluids of animals including plasma, saliva, airway epithelial and nasal lining fluids, milk, tears, and gastric juices. LPO uses hydrogen peroxide (H2O2) to convert substrates into oxidized products. Previous structural studies have shown that H2O2, CO, and CN are bound to LPO at the distal heme cavity by coordinating with heme iron. The structure of the complex of LPO with NO shows that NO also binds to LPO at the distal heme cavity and forms a coordinate linkage with heme iron. The structure shows that the nitrogen atom of NO is linked to heme iron at a distance of 1.97 while the oxygen atom is attached to the Nε2 atom of His109 at a distance of 2.23 Å. On the other hand, N atom of NO is located with an interatomic distance of 3.25 Å allowing a hydrogen-bonding interaction with the Nε2 atom of Gln105. A comparison of the bindings of NO, CO, CN, and H2O2 in coordination with heme iron indicates stereochemical compatibility of the distal heme cavity for the binding of diatomic molecules. However, notable differences are observed in their orientations in the distal heme cavity indicating functional differences. The bindings of NO, CO, and CN by coordinating with heme iron result in the inhibition of LPO while the binding of H2O2 to heme iron produces an intermediate of LPO known as Compound I.

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