9ISM image
Deposition Date 2024-07-18
Release Date 2025-07-23
Last Version Date 2025-07-30
Entry Detail
PDB ID:
9ISM
Keywords:
Title:
Cryo-EM structure of MxaF/MxaJ complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.78 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methanol dehydrogenase, alpha subunit
Gene (Uniprot):mxaF
Chain IDs:A, C
Chain Length:632
Number of Molecules:2
Biological Source:Methylorubrum extorquens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methanol oxidation protein MxaJ
Gene (Uniprot):mxaJ
Chain IDs:B, D
Chain Length:300
Number of Molecules:2
Biological Source:Methylorubrum extorquens
Ligand Molecules
Primary Citation
Deciphering the assembly process of PQQ dependent methanol dehydrogenase.
Nat Commun 16 6672 6672 (2025)
PMID: 40683858 DOI: 10.1038/s41467-025-61958-w

Abstact

Pyrroloquinoline quinone (PQQ)-dependent methanol dehydrogenases (MDHs), the periplasmic metalloenzymes in Gram-negative methylotrophic bacteria, play a pivotal role in methane and methanol bio-utilization. Although the structures of many PQQ-dependent MDHs have been resolved, including the canonical heterotetrameric enzymes composed of two MxaF and two MxaI subunits with a molecule of PQQ and a calcium ion in the active site in MxaF, the biogenesis of these enzymes remains elusive. Here, we characterize a chaperone, MxaJ, responsible for PQQ incorporation by reconstructing a PQQ-dependent MDH assembly system in Escherichia coli. Using cryo-electron microscopy, we capture the structures of the intermediate complexes formed by the chaperone MxaJ and catalytic subunit MxaF during PQQ-dependent MDH maturation, revealing a chaperone-mediated molecular mechanism of cofactor incorporation. These findings not only advance our understanding on the biogenesis of PQQ-dependent MDH, but also provide an alternative engineering way for methane and methanol bioconversion.

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Primary Citation of related structures
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