9ISH image
Deposition Date 2024-07-17
Release Date 2025-05-28
Last Version Date 2025-05-28
Entry Detail
PDB ID:
9ISH
Title:
Crystal structure of nanobody 32 in complex with HSV-2 gD
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.88 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycoprotein D
Chain IDs:A (auth: C), C (auth: A)
Chain Length:275
Number of Molecules:2
Biological Source:Human alphaherpesvirus 2
Polymer Type:polypeptide(L)
Molecule:Nanobody 32
Chain IDs:B (auth: D), D (auth: B)
Chain Length:131
Number of Molecules:2
Biological Source:Vicugna pacos
Ligand Molecules
Primary Citation
A potent protective bispecific nanobody targeting Herpes simplex virus gD reveals vulnerable epitope for neutralizing.
Nat Commun 16 4196 4196 (2025)
PMID: 40328740 DOI: 10.1038/s41467-025-58669-7

Abstact

Herpes simplex virus (HSV) causes significant health burden worldwide. Currently used antiviral drugs are effective but resistance can occur. Here, we report two high-affinity neutralizing nanobodies, namely Nb14 and Nb32, that target non-overlapping epitopes in HSV gD. Nb14 binds a neutralization epitope located in the N-A' interloop, which prevents the interaction between gD and gH/gL during the second step of conformational changes during membrane fusion after virus attachment. The bispecific nanobody dimer (Nb14-32-Fc) exhibits high potency in vitro and in vivo. Mechanistically, Nb14-32-Fc neutralizes HSVs at both the pre-and post-attachment stages and prevents cell-to-cell spread in vitro. Administration of Nb14-32-Fc at low dosage of 1 mg/kg provides 100% protection in an HSV-1 infection male mouse model and an HSV-2 infection female mouse model. Our results demonstrate that Nb14-32-Fc could serve as a promising drug candidate for treatment of HSV infection, especially in the cases of antiviral drug resistance and severe herpes encephalitis.

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Protein

Chemical

Disease

Primary Citation of related structures
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