9IS4 image
Deposition Date 2024-07-16
Release Date 2025-05-21
Last Version Date 2025-07-30
Entry Detail
PDB ID:
9IS4
Keywords:
Title:
Cryo-EM structure of a TEF30-associated intermediate C2S-type PSII-LHCII supercomplex from Chlamydomonas reinhardtii
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PDZ domain-containing protein
Gene (Uniprot):CHLRE_01g031100v5
Chain IDs:A (auth: 1)
Chain Length:159
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA
Chain IDs:B (auth: A), W (auth: a)
Chain Length:335
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:C (auth: B), X (auth: b)
Chain Length:481
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:D (auth: C), Y (auth: c)
Chain Length:449
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:E (auth: D), Z (auth: d)
Chain Length:351
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:F (auth: E), AA (auth: e)
Chain Length:75
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:G (auth: F), BA (auth: f)
Chain Length:31
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcII-3
Chain IDs:H (auth: G)
Chain Length:219
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:I (auth: H), CA (auth: h)
Chain Length:69
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:J (auth: I), DA (auth: i)
Chain Length:35
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:K, EA (auth: k)
Chain Length:37
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:L, FA (auth: l)
Chain Length:37
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:M, GA (auth: m)
Chain Length:31
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcII-1.3
Chain IDs:N
Chain Length:219
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 1, chloroplastic
Gene (Uniprot):PSBO
Chain IDs:O
Chain Length:240
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):lhcb5
Chain IDs:P (auth: S)
Chain Length:250
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:Q (auth: T), IA (auth: t)
Chain Length:30
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Psb30
Gene (Uniprot):psb30
Chain IDs:R (auth: V), JA (auth: v)
Chain Length:32
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center W protein, chloroplastic
Gene (Uniprot):psbW
Chain IDs:S (auth: W)
Chain Length:56
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chloroplast photosystem II subunit X
Gene (Uniprot):CHLRE_02g082750v5, CHLRE_02g082852v5
Chain IDs:T (auth: X), KA (auth: x)
Chain Length:32
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):LhcII-4
Chain IDs:U (auth: Y)
Chain Length:220
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:V (auth: Z), LA (auth: z)
Chain Length:61
Number of Molecules:2
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein CP29
Gene (Uniprot):Lhcb4
Chain IDs:HA (auth: r)
Chain Length:201
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Primary Citation
Roles of multiple TEF30-associated intermediate complexes in the repair and reassembly of photosystem II in Chlamydomonas reinhardtii.
Nat.Plants 11 1455 1469 (2025)
PMID: 40579438 DOI: 10.1038/s41477-025-02036-3

Abstact

During oxygenic photosynthesis, photosystem II (PSII) uses light energy for oxidizing water and reducing plastoquinone. It is susceptible to photodamage, and the damaged PSII is repaired through a sophisticated biological process assisted by numerous auxiliary proteins. Here we report the cryogenic electron microscopy structures of four PSII-repair complexes from Chlamydomonas reinhardtii associated with the Thylakoid Enriched Fraction 30 (TEF30, an orthologue of plant MET1) protein-namely, a TEF30-PSII core monomer (TEF30-C), two types of TEF30-PSII core dimers (types I and II, TEF302-C2-I and TEF302-C2-II) and a TEF30-C2S-type PSII-LHCII supercomplex (TEF30-C2S; S, strongly associated light-harvesting complex II trimer). TEF30 mediates the assembly of CP43 with the RC47 module by clamping on the stromal surfaces and prevents the premature association of peripheral antennae with PSII-C. In the transition from TEF302-C2-I to TEF302-C2-II, TEF30-C2S and mature C2S2, one PSII core slides along the dimerization interface against the adjacent one by 22-35 Å, generating a zigzagged surface for accommodating the peripheral antennae. These results suggest that the PSII repair process undergoes multiple TEF30-mediated intermediate states to form intact PSII-LHCII supercomplexes.

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