9IRX image
Deposition Date 2024-07-16
Release Date 2025-01-15
Last Version Date 2025-05-07
Entry Detail
PDB ID:
9IRX
Title:
Structure of human URAT1 bound with benzbromarone
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Solute carrier family 22 member 12
Gene (Uniprot):SLC22A12
Chain IDs:A
Chain Length:553
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Mechanisms of urate transport and uricosuric drugs inhibition in human URAT1.
Nat Commun 16 1512 1512 (2025)
PMID: 39929841 DOI: 10.1038/s41467-025-56843-5

Abstact

High urate levels in circulation lead to the accumulation of urate crystals in joints and ultimately inflammation and gout. The reabsorption process of urate in the kidney by the urate transporter URAT1 plays a pivotal role in controlling serum urate levels. Pharmacological inhibition of URAT1 by uricosuric drugs is a valid strategy for gout management. Despite the clinical significance of URAT1, its structural mechanism and dynamics remain incompletely understood. Here, we report the structures of human URAT1 (hURAT1) in complex with substrate urate or inhibitors benzbromarone and verinurad at resolution ranges from 3.0 to 3.3 Å. We observe urate in the central substrate-binding site of hURAT1 in the outward-facing conformation and urate is wrapped in the center of hURAT1 by five phenylalanines and coordinated by two positively charged residues on each side. Uricosuric compounds benzbromarone and verinurad occupy the urate-binding site of hURAT1 in the inward-facing conformation. Structural comparison between different conformations of hURAT1 reveals the rocker-switch-like mechanism for urate transport. Benzbromarone and verinurad exert their inhibitory effect by blocking not only the binding of urate but also the structural isomerization of hURAT1.

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Primary Citation of related structures