9IOZ image
Deposition Date 2024-07-10
Release Date 2024-09-04
Last Version Date 2024-09-04
Entry Detail
PDB ID:
9IOZ
Keywords:
Title:
Structure of the bacteriophage T5 tail tip complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Baseplate tube protein p140
Gene (Uniprot):ORF133, T5.144, T5p140
Chain IDs:A, B, C
Chain Length:298
Number of Molecules:3
Biological Source:Escherichia phage T5
Polymer Type:polypeptide(L)
Molecule:Distal tail protein pb9
Gene (Uniprot):D16
Chain IDs:D, E, F, G, H, I
Chain Length:204
Number of Molecules:6
Biological Source:Escherichia phage T5
Polymer Type:polypeptide(L)
Molecule:Baseplate hub protein pb3
Gene (Uniprot):D16
Chain IDs:J, K, L
Chain Length:949
Number of Molecules:3
Biological Source:Escherichia phage T5
Ligand Molecules
Primary Citation
Structures of Mature and Urea-Treated Empty Bacteriophage T5: Insights into Siphophage Infection and DNA Ejection.
Int J Mol Sci 25 ? ? (2024)
PMID: 39126049 DOI: 10.3390/ijms25158479

Abstact

T5 is a siphophage that has been extensively studied by structural and biochemical methods. However, the complete in situ structures of T5 before and after DNA ejection remain unknown. In this study, we used cryo-electron microscopy (cryo-EM) to determine the structures of mature T5 (a laboratory-adapted, fiberless T5 mutant) and urea-treated empty T5 (lacking the tip complex) at near-atomic resolutions. Atomic models of the head, connector complex, tail tube, and tail tip were built for mature T5, and atomic models of the connector complex, comprising the portal protein pb7, adaptor protein p144, and tail terminator protein p142, were built for urea-treated empty T5. Our findings revealed that the aforementioned proteins did not undergo global conformational changes before and after DNA ejection, indicating that these structural features were conserved among most myophages and siphophages. The present study elucidates the underlying mechanisms of siphophage infection and DNA ejection.

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Primary Citation of related structures