9IOL image
Deposition Date 2024-07-09
Release Date 2025-07-09
Last Version Date 2025-07-09
Entry Detail
PDB ID:
9IOL
Keywords:
DNA BINDING PROTEIN/DNA
Title:
Cryo-EM structure of the complex of DNA, Ku70/80, and laXLF.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Spodoptera frugiperda
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.46 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9IOL validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:X-ray repair cross-complementing protein 5
Gene (Uniprot):XRCC5
Chain IDs:A
Chain Length:732
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P13010 Pfam ID:PF03731, PF02735, PF03730, PF08785
Protein Blast
Polymer Type:polypeptide(L)
Molecule:X-ray repair cross-complementing protein 6
Gene (Uniprot):XRCC6
Chain IDs:B
Chain Length:609
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P12956 Pfam ID:PF03731, PF02735, PF03730, PF02037
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*GP*CP*TP*GP*CP*CP*GP*AP*TP*TP*CP*GP*TP*CP*GP*AP*CP*CP*T)-3')
Chain IDs:C
Chain Length:23
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*GP*GP*TP*CP*GP*AP*CP*GP*AP*AP*TP*CP*GP*GP*CP*AP*GP*CP*G)-3')
Chain IDs:D
Chain Length:23
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptide from Non-homologous end-joining factor 1
Gene (Uniprot):NHEJ1
Chain IDs:E (auth: M)
Chain Length:13
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9H9Q4
Ligand Molecules
2OP
IHP
Primary Citation
Cryo-EM structure of the complex of DNA, Ku70/80, and laXLF.
To Be Published ? ? ? (?)
Primary Citation of related structures
9IOL