9IO5 image
Deposition Date 2024-07-08
Release Date 2025-03-12
Last Version Date 2025-03-12
Entry Detail
PDB ID:
9IO5
Keywords:
Title:
Cryo-EM structure of G1-ATPase dimer from Mycoplasma mobile gliding machinery
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:G1-ATPase subunit beta
Gene (Uniprot):atpD
Chain IDs:A, B, C, H, I, J
Chain Length:784
Number of Molecules:6
Biological Source:Mycoplasma mobile 163K
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:G1-ATPase subunit alpha
Gene (Uniprot):atpA
Chain IDs:D, E, F, K, L, M
Chain Length:528
Number of Molecules:6
Biological Source:Mycoplasma mobile 163K
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:G1-ATPase subunit gamma
Gene (Uniprot):MMOB1630
Chain IDs:G, N
Chain Length:336
Number of Molecules:2
Biological Source:Mycoplasma mobile 163K
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phosphoglycerate kinase
Gene (Uniprot):pgk
Chain IDs:O, P, Q
Chain Length:511
Number of Molecules:3
Biological Source:Mycoplasma mobile 163K
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:G1-ATPase subunit D
Gene (Uniprot):MMOB1620
Chain IDs:R, S, T, U, V, W
Chain Length:293
Number of Molecules:6
Biological Source:Mycoplasma mobile 163K
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:G1-ATPase subunit E
Gene (Uniprot):MMOB3660
Chain IDs:X
Chain Length:112
Number of Molecules:1
Biological Source:Mycoplasma mobile 163K
Polymer Type:polypeptide(L)
Molecule:UNKNOWN HELIX
Chain IDs:Y
Chain Length:13
Number of Molecules:1
Biological Source:Mycoplasma mobile 163K
Polymer Type:polypeptide(L)
Molecule:UNKNOWN HELIX
Chain IDs:Z
Chain Length:9
Number of Molecules:1
Biological Source:Mycoplasma mobile 163K
Primary Citation
Dimeric assembly of F 1 -like ATPase for the gliding motility of Mycoplasma.
Sci Adv 11 eadr9319 eadr9319 (2025)
PMID: 40009674 DOI: 10.1126/sciadv.adr9319

Abstact

Rotary ATPases, including F1FO-, V1VO-, and A1AO-ATPases, are molecular motors that exhibit rotational movements for energy conversion. In the gliding bacterium, Mycoplasma mobile, a dimeric F1-like ATPase forms a chain structure within the cell, which is proposed to drive the gliding motility. However, the mechanisms of force generation and transmission remain unclear. We determined the electron cryomicroscopy (cryo-EM) structure of the dimeric F1-like ATPase complex. The structure revealed an assembly distinct from those of dimeric F1FO-ATPases. The F1-like ATPase unit associated by two subunits GliD and GliE was named G1-ATPase as an R1 domain of rotary ATPases. G1-β subunit, a homolog of the F1-ATPase catalytic subunit, exhibited a specific N-terminal region that incorporates the glycolytic enzyme, phosphoglycerate kinase into the complex. Structural features of the ATPase displayed strong similarities to F1-ATPase, suggesting a rotation based on the rotary catalytic mechanism. Overall, the cryo-EM structure provides insights into the mechanism through which G1-ATPase drives the Mycoplasma gliding motility.

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Primary Citation of related structures
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