9INP image
Entry Detail
PDB ID:
9INP
Keywords:
Title:
Human Pin1 (Peptidyl-prolyl cis-trans isomerase) catalytic domain in complex with a covalent inhibitor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-07-08
Release Date:
2025-05-14
Method Details:
Experimental Method:
Resolution:
2.57 Å
R-Value Free:
0.26
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Chain IDs:A, B
Chain Length:121
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Discovery of Novel Pyrimidine Derivatives as Human Pin1 Covalent Inhibitors.
Acs Med.Chem.Lett. 16 101 108 (2025)
PMID: 39811131 DOI: 10.1021/acsmedchemlett.4c00477

Abstact

Pin1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1) is a unique peptidyl-prolyl isomerase (PPIase), and inactivation of Pin1 with a covalent inhibitor is a potential strategy for developing anticancer agents. Herein, a series of sulfolane amino-substituted 2-chloro-5-nitropyrimidine derivatives were disclosed as structurally distinct covalent inhibitors toward Pin1, which were validated for their covalent binding to Cys113 of Pin1 by X-ray cocrystal structures of compounds 4a (IC50 = 11.55 μM) and 6a (IC50 = 3.15 μM). This work provided a new approach for covalent inhibition of Pin1 by taking advantage of the 2-chloro-5-nitropyrimidine as the electrophilic warhead, which might benefit the discovery of potent and drug-like Pin1 inhibitors.

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Primary Citation of related structures